Cluster: MurphyR_2019_SRR7351762_bin.14_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351762_bin.14
- CGC Family ID: CGCFAM_07648
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_23760 | MurphyR_2019_SRR7351762_bin.14_k141_23760_14 | 17755 | 19725 | - | CBM13 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351762_bin.14_k141_23760 | MurphyR_2019_SRR7351762_bin.14_k141_23760_15 | 19904 | 20575 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351762_bin.14_k141_23760 | MurphyR_2019_SRR7351762_bin.14_k141_23760_16 | 20793 | 21476 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_23760 | MurphyR_2019_SRR7351762_bin.14_k141_23760_17 | 22280 | 23215 | + | 3.A.11.1.3 |
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_23760_14
Type: CAZyme
Location: 17755 - 19725 (-)
Type: CAZyme
Location: 17755 - 19725 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_23760_15
Type:
Location: 19904 - 20575 (-)
Type:
Location: 19904 - 20575 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_23760_16
Type:
Location: 20793 - 21476 (-)
Type:
Location: 20793 - 21476 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_23760_17
Type: TC
Location: 22280 - 23215 (+)
Type: TC
Location: 22280 - 23215 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MurphyR_2019_SRR7351762_bin.14_k141_23760_15 | vegan > omnivore | 1.70477 | 0.01280 |