Cluster: MurphyR_2019_SRR7351762_bin.14_CGC11
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351762_bin.14
- CGC Family ID: CGCFAM_00879
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_46 | 67389 | 69944 | - | 9.A.8.1.6 |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_47 | 70067 | 70288 | - | 9.A.8.1.6 |
| STP | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_48 | 70329 | 70571 | - | FeoA |
| STP | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_49 | 70761 | 71009 | - | PTS-HPr |
| TC | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_50 | 71432 | 72895 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_51 | 73049 | 73504 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_52 | 73508 | 76516 | - | GH2 |
| TF | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_53 | 76890 | 77906 | + | LacI |
| pfam | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_54 | 78006 | 79577 | - | PMT_2 |
| CAZyme | MurphyR_2019_SRR7351762_bin.14_k141_14836 | MurphyR_2019_SRR7351762_bin.14_k141_14836_55 | 79623 | 80582 | - | GT2 |
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_46
Type: TC
Location: 67389 - 69944 (-)
Type: TC
Location: 67389 - 69944 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_47
Type: TC
Location: 70067 - 70288 (-)
Type: TC
Location: 70067 - 70288 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_48
Type: STP
Location: 70329 - 70571 (-)
Type: STP
Location: 70329 - 70571 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_49
Type: STP
Location: 70761 - 71009 (-)
Type: STP
Location: 70761 - 71009 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_50
Type: TC
Location: 71432 - 72895 (-)
Type: TC
Location: 71432 - 72895 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_51
Type:
Location: 73049 - 73504 (-)
Type:
Location: 73049 - 73504 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_52
Type: CAZyme
Location: 73508 - 76516 (-)
Type: CAZyme
Location: 73508 - 76516 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_53
Type: TF
Location: 76890 - 77906 (+)
Type: TF
Location: 76890 - 77906 (+)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_54
Type: pfam
Location: 78006 - 79577 (-)
Type: pfam
Location: 78006 - 79577 (-)
Gene ID: MurphyR_2019_SRR7351762_bin.14_k141_14836_55
Type: CAZyme
Location: 79623 - 80582 (-)
Type: CAZyme
Location: 79623 - 80582 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.