Cluster: MurphyR_2019_SRR7351738_bin.5_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351738_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_156 | 188465 | 189634 | - | CE9 |
| STP | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_157 | 189752 | 190918 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_158 | 191033 | 191764 | - | GntR |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_159 | 191950 | 193032 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_160 | 193022 | 193822 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_161 | 193913 | 194395 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_162 | 194432 | 194713 | - | YajC |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_31093 | MurphyR_2019_SRR7351738_bin.5_k141_31093_163 | 194713 | 195156 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_156
Type: CAZyme
Location: 188465 - 189634 (-)
Type: CAZyme
Location: 188465 - 189634 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_157
Type: STP
Location: 189752 - 190918 (-)
Type: STP
Location: 189752 - 190918 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_158
Type: TF
Location: 191033 - 191764 (-)
Type: TF
Location: 191033 - 191764 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_159
Type: TC
Location: 191950 - 193032 (-)
Type: TC
Location: 191950 - 193032 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_160
Type: TC
Location: 193022 - 193822 (-)
Type: TC
Location: 193022 - 193822 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_161
Type: TC
Location: 193913 - 194395 (-)
Type: TC
Location: 193913 - 194395 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_162
Type: pfam
Location: 194432 - 194713 (-)
Type: pfam
Location: 194432 - 194713 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_31093_163
Type: TC
Location: 194713 - 195156 (-)
Type: TC
Location: 194713 - 195156 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.