Cluster: MurphyR_2019_SRR7351738_bin.5_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351738_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_28 | 24030 | 25535 | + | GH77 |
| CAZyme | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_29 | 25664 | 27931 | + | GT35 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_30 | 28389 | 29588 | - | 3.A.1.1.22 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_31 | 29657 | 30496 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_32 | 30496 | 31350 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_33 | 31438 | 32754 | - | 3.A.1.1.45 |
| TF | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_34 | 33061 | 33780 | - | GntR |
| NULL(UNKNOWN) | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_35 | 33864 | 33983 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MurphyR_2019_SRR7351738_bin.5_k141_4368 | MurphyR_2019_SRR7351738_bin.5_k141_4368_36 | 34005 | 36455 | + | 4.A.1.1.8 |
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_28
Type: CAZyme
Location: 24030 - 25535 (+)
Type: CAZyme
Location: 24030 - 25535 (+)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_29
Type: CAZyme
Location: 25664 - 27931 (+)
Type: CAZyme
Location: 25664 - 27931 (+)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_30
Type: TC
Location: 28389 - 29588 (-)
Type: TC
Location: 28389 - 29588 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_31
Type: TC
Location: 29657 - 30496 (-)
Type: TC
Location: 29657 - 30496 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_32
Type: TC
Location: 30496 - 31350 (-)
Type: TC
Location: 30496 - 31350 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_33
Type: TC
Location: 31438 - 32754 (-)
Type: TC
Location: 31438 - 32754 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_34
Type: TF
Location: 33061 - 33780 (-)
Type: TF
Location: 33061 - 33780 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_35
Type:
Location: 33864 - 33983 (-)
Type:
Location: 33864 - 33983 (-)
Gene ID: MurphyR_2019_SRR7351738_bin.5_k141_4368_36
Type: TC
Location: 34005 - 36455 (+)
Type: TC
Location: 34005 - 36455 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp019419665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.