Cluster: MurphyR_2019_SRR7351726_bin.5_CGC17
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: MurphyR_2019_SRR7351726_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_157 | 170066 | 171571 | + | GH77 |
| CAZyme | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_158 | 171700 | 173967 | + | GT35 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_159 | 174345 | 175544 | - | 3.A.1.1.22 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_160 | 175612 | 176451 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_161 | 176451 | 177305 | - | 3.A.1.1.45 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_162 | 177393 | 178709 | - | 3.A.1.1.45 |
| TF | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_163 | 179016 | 179735 | - | GntR |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_164 | 179965 | 182415 | + | 4.A.1.1.8 |
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_157
Type: CAZyme
Location: 170066 - 171571 (+)
Type: CAZyme
Location: 170066 - 171571 (+)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_158
Type: CAZyme
Location: 171700 - 173967 (+)
Type: CAZyme
Location: 171700 - 173967 (+)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_159
Type: TC
Location: 174345 - 175544 (-)
Type: TC
Location: 174345 - 175544 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_160
Type: TC
Location: 175612 - 176451 (-)
Type: TC
Location: 175612 - 176451 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_161
Type: TC
Location: 176451 - 177305 (-)
Type: TC
Location: 176451 - 177305 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_162
Type: TC
Location: 177393 - 178709 (-)
Type: TC
Location: 177393 - 178709 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_163
Type: TF
Location: 179016 - 179735 (-)
Type: TF
Location: 179016 - 179735 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_164
Type: TC
Location: 179965 - 182415 (+)
Type: TC
Location: 179965 - 182415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.