Cluster: MurphyR_2019_SRR7351726_bin.5_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MurphyR_2019_SRR7351726_bin.5
- Continent: Oceania
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_64 | 75337 | 76506 | - | CE9 |
| STP | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_65 | 76624 | 77790 | - | SIS | SIS |
| TF | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_66 | 77905 | 78636 | - | GntR |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_67 | 78822 | 79904 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_68 | 79894 | 80694 | - | 4.A.6.1.4 |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_69 | 80785 | 81267 | - | 4.A.6.1.4 |
| pfam | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_70 | 81304 | 81585 | - | YajC |
| TC | MurphyR_2019_SRR7351726_bin.5_k141_45266 | MurphyR_2019_SRR7351726_bin.5_k141_45266_71 | 81585 | 82028 | - | 4.A.6.1.16 |
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_64
Type: CAZyme
Location: 75337 - 76506 (-)
Type: CAZyme
Location: 75337 - 76506 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_65
Type: STP
Location: 76624 - 77790 (-)
Type: STP
Location: 76624 - 77790 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_66
Type: TF
Location: 77905 - 78636 (-)
Type: TF
Location: 77905 - 78636 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_67
Type: TC
Location: 78822 - 79904 (-)
Type: TC
Location: 78822 - 79904 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_68
Type: TC
Location: 79894 - 80694 (-)
Type: TC
Location: 79894 - 80694 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_69
Type: TC
Location: 80785 - 81267 (-)
Type: TC
Location: 80785 - 81267 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_70
Type: pfam
Location: 81304 - 81585 (-)
Type: pfam
Location: 81304 - 81585 (-)
Gene ID: MurphyR_2019_SRR7351726_bin.5_k141_45266_71
Type: TC
Location: 81585 - 82028 (-)
Type: TC
Location: 81585 - 82028 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.