Cluster: MGYG000004880_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate: pectin
- Genome ID: MGYG000004880
- CGC Family ID: CGCFAM_00136
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004880_9 | MGYG000004880_9_71 | 82575 | 87332 | + | GH105 | GH28 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_72 | 87362 | 89149 | + | PL1_2 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_73 | 89419 | 92553 | + | CE8 |
| TC | MGYG000004880_9 | MGYG000004880_9_74 | 92787 | 96023 | + | 1.B.14.6.1 |
| pfam | MGYG000004880_9 | MGYG000004880_9_75 | 96040 | 97986 | + | SusD_RagB | SusD-like_3 |
| pfam | MGYG000004880_9 | MGYG000004880_9_76 | 98014 | 99657 | + | fn3 | DUF5123 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_77 | 99883 | 101583 | + | PL1_2 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_78 | 101741 | 104329 | + | GH3 |
| pfam | MGYG000004880_9 | MGYG000004880_9_79 | 105255 | 106838 | + | WG_beta_rep | WG_beta_rep | WG_beta_rep | WG_beta_rep | WG_beta_rep | WG_beta_rep | WG_beta_rep |
| pfam | MGYG000004880_9 | MGYG000004880_9_80 | 106884 | 108083 | + | TonB_C | Sel1 | Sel1 | Sel1 | Sel1 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_81 | 108190 | 109611 | - | GH57 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_82 | 109696 | 110964 | - | GT4 |
| CAZyme | MGYG000004880_9 | MGYG000004880_9_83 | 110979 | 112928 | - | GH133 |
Gene ID: MGYG000004880_9_71
Type: CAZyme
Location: 82575 - 87332 (+)
Type: CAZyme
Location: 82575 - 87332 (+)
Gene ID: MGYG000004880_9_72
Type: CAZyme
Location: 87362 - 89149 (+)
Type: CAZyme
Location: 87362 - 89149 (+)
Gene ID: MGYG000004880_9_73
Type: CAZyme
Location: 89419 - 92553 (+)
Type: CAZyme
Location: 89419 - 92553 (+)
Gene ID: MGYG000004880_9_74
Type: TC
Location: 92787 - 96023 (+)
Type: TC
Location: 92787 - 96023 (+)
Gene ID: MGYG000004880_9_75
Type: pfam
Location: 96040 - 97986 (+)
Type: pfam
Location: 96040 - 97986 (+)
Gene ID: MGYG000004880_9_76
Type: pfam
Location: 98014 - 99657 (+)
Type: pfam
Location: 98014 - 99657 (+)
Gene ID: MGYG000004880_9_77
Type: CAZyme
Location: 99883 - 101583 (+)
Type: CAZyme
Location: 99883 - 101583 (+)
Gene ID: MGYG000004880_9_78
Type: CAZyme
Location: 101741 - 104329 (+)
Type: CAZyme
Location: 101741 - 104329 (+)
Gene ID: MGYG000004880_9_79
Type: pfam
Location: 105255 - 106838 (+)
Type: pfam
Location: 105255 - 106838 (+)
Gene ID: MGYG000004880_9_80
Type: pfam
Location: 106884 - 108083 (+)
Type: pfam
Location: 106884 - 108083 (+)
Gene ID: MGYG000004880_9_81
Type: CAZyme
Location: 108190 - 109611 (-)
Type: CAZyme
Location: 108190 - 109611 (-)
Gene ID: MGYG000004880_9_82
Type: CAZyme
Location: 109696 - 110964 (-)
Type: CAZyme
Location: 109696 - 110964 (-)
Gene ID: MGYG000004880_9_83
Type: CAZyme
Location: 110979 - 112928 (-)
Type: CAZyme
Location: 110979 - 112928 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp905216025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.