Cluster: MGYG000004879_CGC24
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000004879
- CGC Family ID: CGCFAM_00224
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004879_26 | MGYG000004879_26_7 | 10213 | 11343 | - | GH8 |
| TC | MGYG000004879_26 | MGYG000004879_26_8 | 11400 | 12299 | - | 3.A.1.1.29 |
| TC | MGYG000004879_26 | MGYG000004879_26_9 | 12315 | 13274 | - | 3.A.1.1.29 |
| TC | MGYG000004879_26 | MGYG000004879_26_10 | 13360 | 15027 | - | 3.A.1.1.29 |
| TF | MGYG000004879_26 | MGYG000004879_26_11 | 15221 | 16822 | - | HTH_AraC |
| TC | MGYG000004879_26 | MGYG000004879_26_12 | 16841 | 18601 | - | 9.B.33.1.1 |
| CAZyme | MGYG000004879_26 | MGYG000004879_26_13 | 18662 | 21733 | - | GH115 |
| pfam | MGYG000004879_26 | MGYG000004879_26_14 | 21720 | 23084 | - | MatE | MatE |
| CAZyme | MGYG000004879_26 | MGYG000004879_26_15 | 23219 | 25417 | - | GH3 |
| TF | MGYG000004879_26 | MGYG000004879_26_16 | 25614 | 26477 | + | HTH_AraC | HTH_AraC |
| CAZyme | MGYG000004879_26 | MGYG000004879_26_17 | 26516 | 28096 | - | CBM91 | GH43_12 |
| CAZyme | MGYG000004879_26 | MGYG000004879_26_18 | 28228 | 30045 | - | CE17 |
| pfam | MGYG000004879_26 | MGYG000004879_26_19 | 30510 | 34673 | - | ACR_tran | MMPL | MMPL |
| STP | MGYG000004879_26 | MGYG000004879_26_20 | 34917 | 35483 | + | TetR_N |
| TC | MGYG000004879_26 | MGYG000004879_26_21 | 35540 | 36187 | - | 3.A.1.124.5 |
Gene ID: MGYG000004879_26_7
Type: CAZyme
Location: 10213 - 11343 (-)
Type: CAZyme
Location: 10213 - 11343 (-)
Gene ID: MGYG000004879_26_8
Type: TC
Location: 11400 - 12299 (-)
Type: TC
Location: 11400 - 12299 (-)
Gene ID: MGYG000004879_26_9
Type: TC
Location: 12315 - 13274 (-)
Type: TC
Location: 12315 - 13274 (-)
Gene ID: MGYG000004879_26_10
Type: TC
Location: 13360 - 15027 (-)
Type: TC
Location: 13360 - 15027 (-)
Gene ID: MGYG000004879_26_11
Type: TF
Location: 15221 - 16822 (-)
Type: TF
Location: 15221 - 16822 (-)
Gene ID: MGYG000004879_26_12
Type: TC
Location: 16841 - 18601 (-)
Type: TC
Location: 16841 - 18601 (-)
Gene ID: MGYG000004879_26_13
Type: CAZyme
Location: 18662 - 21733 (-)
Type: CAZyme
Location: 18662 - 21733 (-)
Gene ID: MGYG000004879_26_14
Type: pfam
Location: 21720 - 23084 (-)
Type: pfam
Location: 21720 - 23084 (-)
Gene ID: MGYG000004879_26_15
Type: CAZyme
Location: 23219 - 25417 (-)
Type: CAZyme
Location: 23219 - 25417 (-)
Gene ID: MGYG000004879_26_16
Type: TF
Location: 25614 - 26477 (+)
Type: TF
Location: 25614 - 26477 (+)
Gene ID: MGYG000004879_26_17
Type: CAZyme
Location: 26516 - 28096 (-)
Type: CAZyme
Location: 26516 - 28096 (-)
Gene ID: MGYG000004879_26_18
Type: CAZyme
Location: 28228 - 30045 (-)
Type: CAZyme
Location: 28228 - 30045 (-)
Gene ID: MGYG000004879_26_19
Type: pfam
Location: 30510 - 34673 (-)
Type: pfam
Location: 30510 - 34673 (-)
Gene ID: MGYG000004879_26_20
Type: STP
Location: 34917 - 35483 (+)
Type: STP
Location: 34917 - 35483 (+)
Gene ID: MGYG000004879_26_21
Type: TC
Location: 35540 - 36187 (-)
Type: TC
Location: 35540 - 36187 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Clostridium_N
Species
Clostridium_N sp905215405
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.