Cluster: MGYG000004854_CGC24
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004854
- CGC Family ID: CGCFAM_00317
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004854_6 | MGYG000004854_6_155 | 158164 | 158844 | - | 3.A.2.1.5 |
| NULL(UNKNOWN) | MGYG000004854_6 | MGYG000004854_6_156 | 159111 | 159458 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000004854_6 | MGYG000004854_6_157 | 159473 | 160408 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | MGYG000004854_6 | MGYG000004854_6_158 | 160408 | 161559 | - | GT4 |
| CAZyme | MGYG000004854_6 | MGYG000004854_6_159 | 161559 | 162707 | - | GT4 |
| pfam | MGYG000004854_6 | MGYG000004854_6_160 | 162946 | 163983 | - | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | MGYG000004854_6 | MGYG000004854_6_161 | 164064 | 165125 | - | NTP_transferase | NTP_transf_3 | ManC_GMP_beta-helix |
| TC | MGYG000004854_6 | MGYG000004854_6_162 | 165122 | 166459 | - | 9.B.18.1.3 |
| TF | MGYG000004854_6 | MGYG000004854_6_163 | 166929 | 167978 | + | 0043758 |
| pfam | MGYG000004854_6 | MGYG000004854_6_164 | 167998 | 168546 | + | GrpE |
| TC | MGYG000004854_6 | MGYG000004854_6_165 | 168658 | 170511 | + | 1.A.33.1.4 |
| pfam | MGYG000004854_6 | MGYG000004854_6_166 | 170801 | 171949 | + | DnaJ | DnaJ_CXXCXGXG | DnaJ_C |
| CAZyme | MGYG000004854_6 | MGYG000004854_6_167 | 172074 | 173954 | - | GH5_4 |
| pfam | MGYG000004854_6 | MGYG000004854_6_168 | 174140 | 175060 | - | PRK |
| TC | MGYG000004854_6 | MGYG000004854_6_169 | 175311 | 176531 | + | 9.A.8.1.5 |
Gene ID: MGYG000004854_6_155
Type: TC
Location: 158164 - 158844 (-)
Type: TC
Location: 158164 - 158844 (-)
Gene ID: MGYG000004854_6_156
Type:
Location: 159111 - 159458 (-)
Type:
Location: 159111 - 159458 (-)
Gene ID: MGYG000004854_6_157
Type: pfam
Location: 159473 - 160408 (-)
Type: pfam
Location: 159473 - 160408 (-)
Gene ID: MGYG000004854_6_158
Type: CAZyme
Location: 160408 - 161559 (-)
Type: CAZyme
Location: 160408 - 161559 (-)
Gene ID: MGYG000004854_6_159
Type: CAZyme
Location: 161559 - 162707 (-)
Type: CAZyme
Location: 161559 - 162707 (-)
Gene ID: MGYG000004854_6_160
Type: pfam
Location: 162946 - 163983 (-)
Type: pfam
Location: 162946 - 163983 (-)
Gene ID: MGYG000004854_6_161
Type: pfam
Location: 164064 - 165125 (-)
Type: pfam
Location: 164064 - 165125 (-)
Gene ID: MGYG000004854_6_162
Type: TC
Location: 165122 - 166459 (-)
Type: TC
Location: 165122 - 166459 (-)
Gene ID: MGYG000004854_6_163
Type: TF
Location: 166929 - 167978 (+)
Type: TF
Location: 166929 - 167978 (+)
Gene ID: MGYG000004854_6_164
Type: pfam
Location: 167998 - 168546 (+)
Type: pfam
Location: 167998 - 168546 (+)
Gene ID: MGYG000004854_6_165
Type: TC
Location: 168658 - 170511 (+)
Type: TC
Location: 168658 - 170511 (+)
Gene ID: MGYG000004854_6_166
Type: pfam
Location: 170801 - 171949 (+)
Type: pfam
Location: 170801 - 171949 (+)
Gene ID: MGYG000004854_6_167
Type: CAZyme
Location: 172074 - 173954 (-)
Type: CAZyme
Location: 172074 - 173954 (-)
Gene ID: MGYG000004854_6_168
Type: pfam
Location: 174140 - 175060 (-)
Type: pfam
Location: 174140 - 175060 (-)
Gene ID: MGYG000004854_6_169
Type: TC
Location: 175311 - 176531 (+)
Type: TC
Location: 175311 - 176531 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus
Species
Ruminococcus sp905215965
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.