Cluster: MGYG000004837_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004837
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004837_10 | MGYG000004837_10_3 | 3606 | 4661 | + | GT9 |
| pfam | MGYG000004837_10 | MGYG000004837_10_4 | 4736 | 5080 | - | CMD |
| TF | MGYG000004837_10 | MGYG000004837_10_5 | 5184 | 6074 | + | HTH_AraC | HTH_AraC |
| TC | MGYG000004837_10 | MGYG000004837_10_6 | 6150 | 7994 | + | 3.A.1.106.2 |
Gene ID: MGYG000004837_10_3
Type: CAZyme
Location: 3606 - 4661 (+)
Type: CAZyme
Location: 3606 - 4661 (+)
Gene ID: MGYG000004837_10_4
Type: pfam
Location: 4736 - 5080 (-)
Type: pfam
Location: 4736 - 5080 (-)
Gene ID: MGYG000004837_10_5
Type: TF
Location: 5184 - 6074 (+)
Type: TF
Location: 5184 - 6074 (+)
Gene ID: MGYG000004837_10_6
Type: TC
Location: 6150 - 7994 (+)
Type: TC
Location: 6150 - 7994 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905207935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004837_10_3 | vegetarian > omnivore | 1.22497 | 0.03688 |
| MGYG000004837_10_4 | vegan > omnivore | 1.26533 | 0.00918 |
| MGYG000004837_10_4 | vegetarian > omnivore | 1.65792 | 0.03688 |