Cluster: MGYG000004837_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004837
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004837_46 | MGYG000004837_46_1 | 245 | 1372 | + | GH102 |
| TC | MGYG000004837_46 | MGYG000004837_46_2 | 1372 | 2133 | + | 3.A.16.1.3 |
| TC | MGYG000004837_46 | MGYG000004837_46_3 | 2302 | 3288 | + | 3.A.1.15.5 |
| pfam | MGYG000004837_46 | MGYG000004837_46_4 | 3408 | 5543 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | MGYG000004837_46 | MGYG000004837_46_5 | 5579 | 7483 | - | 2.A.37.1.2 |
Gene ID: MGYG000004837_46_1
Type: CAZyme
Location: 245 - 1372 (+)
Type: CAZyme
Location: 245 - 1372 (+)
Gene ID: MGYG000004837_46_2
Type: TC
Location: 1372 - 2133 (+)
Type: TC
Location: 1372 - 2133 (+)
Gene ID: MGYG000004837_46_3
Type: TC
Location: 2302 - 3288 (+)
Type: TC
Location: 2302 - 3288 (+)
Gene ID: MGYG000004837_46_4
Type: pfam
Location: 3408 - 5543 (+)
Type: pfam
Location: 3408 - 5543 (+)
Gene ID: MGYG000004837_46_5
Type: TC
Location: 5579 - 7483 (-)
Type: TC
Location: 5579 - 7483 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp905207935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004837_46_1 | vegetarian > omnivore | 1.37019 | 0.03688 |
| MGYG000004837_46_2 | vegan > omnivore | 1.36824 | 0.00918 |
| MGYG000004837_46_2 | vegetarian > omnivore | 1.63378 | 0.03688 |
| MGYG000004837_46_4 | vegan > omnivore | 1.32106 | 0.00918 |
| MGYG000004837_46_4 | vegetarian > omnivore | 1.43297 | 0.03688 |
| MGYG000004837_46_5 | vegetarian > omnivore | 1.15305 | 0.03688 |