Cluster: MGYG000004827_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000004827
- CGC Family ID: CGCFAM_01453
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004827_19 | MGYG000004827_19_5 | 3063 | 3746 | - | 9.B.149.1.11 |
| NULL(UNKNOWN) | MGYG000004827_19 | MGYG000004827_19_6 | 3756 | 4052 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004827_19 | MGYG000004827_19_7 | 4039 | 6072 | - | 3.A.1.121.4 |
| pfam | MGYG000004827_19 | MGYG000004827_19_8 | 6390 | 7031 | - | TPK_catalytic | TPK_B1_binding |
| pfam | MGYG000004827_19 | MGYG000004827_19_9 | 7041 | 7730 | - | Hydrolase | HAD | HAD_2 |
| CAZyme | MGYG000004827_19 | MGYG000004827_19_10 | 8077 | 10332 | + | CBM48 | GH13_9 |
| CAZyme | MGYG000004827_19 | MGYG000004827_19_11 | 10427 | 12853 | + | GT35 |
| pfam | MGYG000004827_19 | MGYG000004827_19_12 | 12962 | 14110 | + | NTP_transferase | Hexapep_GlmU |
| pfam | MGYG000004827_19 | MGYG000004827_19_13 | 14115 | 15242 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | MGYG000004827_19 | MGYG000004827_19_14 | 15332 | 17548 | + | GT5 |
| CAZyme | MGYG000004827_19 | MGYG000004827_19_15 | 17768 | 21064 | + | GH13_39 | GH77 |
Gene ID: MGYG000004827_19_5
Type: TC
Location: 3063 - 3746 (-)
Type: TC
Location: 3063 - 3746 (-)
Gene ID: MGYG000004827_19_6
Type:
Location: 3756 - 4052 (-)
Type:
Location: 3756 - 4052 (-)
Gene ID: MGYG000004827_19_7
Type: TC
Location: 4039 - 6072 (-)
Type: TC
Location: 4039 - 6072 (-)
Gene ID: MGYG000004827_19_8
Type: pfam
Location: 6390 - 7031 (-)
Type: pfam
Location: 6390 - 7031 (-)
Gene ID: MGYG000004827_19_9
Type: pfam
Location: 7041 - 7730 (-)
Type: pfam
Location: 7041 - 7730 (-)
Gene ID: MGYG000004827_19_10
Type: CAZyme
Location: 8077 - 10332 (+)
Type: CAZyme
Location: 8077 - 10332 (+)
Gene ID: MGYG000004827_19_11
Type: CAZyme
Location: 10427 - 12853 (+)
Type: CAZyme
Location: 10427 - 12853 (+)
Gene ID: MGYG000004827_19_12
Type: pfam
Location: 12962 - 14110 (+)
Type: pfam
Location: 12962 - 14110 (+)
Gene ID: MGYG000004827_19_13
Type: pfam
Location: 14115 - 15242 (+)
Type: pfam
Location: 14115 - 15242 (+)
Gene ID: MGYG000004827_19_14
Type: CAZyme
Location: 15332 - 17548 (+)
Type: CAZyme
Location: 15332 - 17548 (+)
Gene ID: MGYG000004827_19_15
Type: CAZyme
Location: 17768 - 21064 (+)
Type: CAZyme
Location: 17768 - 21064 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900754385
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.