Cluster: MGYG000004788_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004788
- CGC Family ID: CGCFAM_02702
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004788_1 | MGYG000004788_1_68 | 70279 | 71367 | - | GH170 |
| NULL(UNKNOWN) | MGYG000004788_1 | MGYG000004788_1_69 | 71364 | 71630 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004788_1 | MGYG000004788_1_70 | 71640 | 72917 | - | 4.A.3.2.2 |
| TF | MGYG000004788_1 | MGYG000004788_1_71 | 72989 | 73684 | - | GntR |
| TC | MGYG000004788_1 | MGYG000004788_1_72 | 73840 | 76599 | - | 3.A.23.1.1 |
| STP | MGYG000004788_1 | MGYG000004788_1_73 | 76685 | 77656 | - | SIS |
| TC | MGYG000004788_1 | MGYG000004788_1_74 | 77762 | 78601 | - | 4.A.6.1.19 |
| TC | MGYG000004788_1 | MGYG000004788_1_75 | 78618 | 79388 | - | 4.A.6.1.19 |
| TC | MGYG000004788_1 | MGYG000004788_1_76 | 79405 | 79875 | - | 4.A.6.1.19 |
| pfam | MGYG000004788_1 | MGYG000004788_1_77 | 79859 | 80287 | - | EIIA-man |
| CAZyme | MGYG000004788_1 | MGYG000004788_1_78 | 80481 | 82151 | - | GH13_31 |
| TC | MGYG000004788_1 | MGYG000004788_1_79 | 82151 | 82978 | - | 4.A.6.1.19 |
| TC | MGYG000004788_1 | MGYG000004788_1_80 | 82998 | 83825 | - | 4.A.6.1.19 |
| TC | MGYG000004788_1 | MGYG000004788_1_81 | 83854 | 84345 | - | 4.A.6.1.19 |
| TC | MGYG000004788_1 | MGYG000004788_1_82 | 84359 | 84784 | - | 4.A.6.1.19 |
Gene ID: MGYG000004788_1_68
Type: CAZyme
Location: 70279 - 71367 (-)
Type: CAZyme
Location: 70279 - 71367 (-)
Gene ID: MGYG000004788_1_69
Type:
Location: 71364 - 71630 (-)
Type:
Location: 71364 - 71630 (-)
Gene ID: MGYG000004788_1_70
Type: TC
Location: 71640 - 72917 (-)
Type: TC
Location: 71640 - 72917 (-)
Gene ID: MGYG000004788_1_71
Type: TF
Location: 72989 - 73684 (-)
Type: TF
Location: 72989 - 73684 (-)
Gene ID: MGYG000004788_1_72
Type: TC
Location: 73840 - 76599 (-)
Type: TC
Location: 73840 - 76599 (-)
Gene ID: MGYG000004788_1_73
Type: STP
Location: 76685 - 77656 (-)
Type: STP
Location: 76685 - 77656 (-)
Gene ID: MGYG000004788_1_74
Type: TC
Location: 77762 - 78601 (-)
Type: TC
Location: 77762 - 78601 (-)
Gene ID: MGYG000004788_1_75
Type: TC
Location: 78618 - 79388 (-)
Type: TC
Location: 78618 - 79388 (-)
Gene ID: MGYG000004788_1_76
Type: TC
Location: 79405 - 79875 (-)
Type: TC
Location: 79405 - 79875 (-)
Gene ID: MGYG000004788_1_77
Type: pfam
Location: 79859 - 80287 (-)
Type: pfam
Location: 79859 - 80287 (-)
Gene ID: MGYG000004788_1_78
Type: CAZyme
Location: 80481 - 82151 (-)
Type: CAZyme
Location: 80481 - 82151 (-)
Gene ID: MGYG000004788_1_79
Type: TC
Location: 82151 - 82978 (-)
Type: TC
Location: 82151 - 82978 (-)
Gene ID: MGYG000004788_1_80
Type: TC
Location: 82998 - 83825 (-)
Type: TC
Location: 82998 - 83825 (-)
Gene ID: MGYG000004788_1_81
Type: TC
Location: 83854 - 84345 (-)
Type: TC
Location: 83854 - 84345 (-)
Gene ID: MGYG000004788_1_82
Type: TC
Location: 84359 - 84784 (-)
Type: TC
Location: 84359 - 84784 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Companilactobacillus
Species
Companilactobacillus farciminis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.