Cluster: MGYG000004786_CGC6
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000004786
- CGC Family ID: CGCFAM_06870
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004786_3 | MGYG000004786_3_16 | 15203 | 17455 | - | GH3 |
| TF | MGYG000004786_3 | MGYG000004786_3_17 | 17476 | 18489 | - | LacI |
| TC | MGYG000004786_3 | MGYG000004786_3_18 | 18762 | 19739 | + | 3.A.1.1.29 |
| TC | MGYG000004786_3 | MGYG000004786_3_19 | 19759 | 20691 | + | 3.A.1.1.29 |
| pfam | MGYG000004786_3 | MGYG000004786_3_20 | 20767 | 22182 | + | DUF3502 |
| CAZyme | MGYG000004786_3 | MGYG000004786_3_21 | 22398 | 23384 | + | GH130_2 |
| CAZyme | MGYG000004786_3 | MGYG000004786_3_22 | 23419 | 26523 | + | GH38 |
| CAZyme | MGYG000004786_3 | MGYG000004786_3_23 | 26523 | 28364 | + | GH20 |
| STP | MGYG000004786_3 | MGYG000004786_3_24 | 28561 | 29649 | + | PfkB |
| pfam | MGYG000004786_3 | MGYG000004786_3_25 | 29757 | 30611 | + | SAM_HAT_N | SAM_HAT_C |
| TC | MGYG000004786_3 | MGYG000004786_3_26 | 30676 | 31224 | + | 3.A.1.29.1 |
| TC | MGYG000004786_3 | MGYG000004786_3_27 | 31295 | 33022 | + | 3.A.1.29.1 |
| TC | MGYG000004786_3 | MGYG000004786_3_28 | 33000 | 33836 | + | 3.A.1.29.1 |
Gene ID: MGYG000004786_3_16
Type: CAZyme
Location: 15203 - 17455 (-)
Type: CAZyme
Location: 15203 - 17455 (-)
Gene ID: MGYG000004786_3_17
Type: TF
Location: 17476 - 18489 (-)
Type: TF
Location: 17476 - 18489 (-)
Gene ID: MGYG000004786_3_18
Type: TC
Location: 18762 - 19739 (+)
Type: TC
Location: 18762 - 19739 (+)
Gene ID: MGYG000004786_3_19
Type: TC
Location: 19759 - 20691 (+)
Type: TC
Location: 19759 - 20691 (+)
Gene ID: MGYG000004786_3_20
Type: pfam
Location: 20767 - 22182 (+)
Type: pfam
Location: 20767 - 22182 (+)
Gene ID: MGYG000004786_3_21
Type: CAZyme
Location: 22398 - 23384 (+)
Type: CAZyme
Location: 22398 - 23384 (+)
Gene ID: MGYG000004786_3_22
Type: CAZyme
Location: 23419 - 26523 (+)
Type: CAZyme
Location: 23419 - 26523 (+)
Gene ID: MGYG000004786_3_23
Type: CAZyme
Location: 26523 - 28364 (+)
Type: CAZyme
Location: 26523 - 28364 (+)
Gene ID: MGYG000004786_3_24
Type: STP
Location: 28561 - 29649 (+)
Type: STP
Location: 28561 - 29649 (+)
Gene ID: MGYG000004786_3_25
Type: pfam
Location: 29757 - 30611 (+)
Type: pfam
Location: 29757 - 30611 (+)
Gene ID: MGYG000004786_3_26
Type: TC
Location: 30676 - 31224 (+)
Type: TC
Location: 30676 - 31224 (+)
Gene ID: MGYG000004786_3_27
Type: TC
Location: 31295 - 33022 (+)
Type: TC
Location: 31295 - 33022 (+)
Gene ID: MGYG000004786_3_28
Type: TC
Location: 33000 - 33836 (+)
Type: TC
Location: 33000 - 33836 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Christensenellales
Family
Aristaeellaceae
Genus
Limiplasma
Species
Limiplasma sp900550955
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.