Cluster: MGYG000004763_CGC40
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 8
- Substrate: xylan
- Genome ID: MGYG000004763
- CGC Family ID: CGCFAM_00238
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004763_41 | MGYG000004763_41_1 | 1 | 1203 | - | GH43_29 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_2 | 1300 | 3249 | - | GH97 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_3 | 3258 | 4601 | - | CBM6 | GH43_29 |
| NULL(UNKNOWN) | MGYG000004763_41 | MGYG000004763_41_4 | 4765 | 5214 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_5 | 5546 | 7948 | - | GH146 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_6 | 7994 | 9862 | - | CE20 | CE20 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_7 | 9859 | 11466 | - | GH30_8 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_8 | 11606 | 13840 | - | GH10 |
| pfam | MGYG000004763_41 | MGYG000004763_41_9 | 13931 | 14971 | - | BT_3987-like_N | DUF5627 |
| pfam | MGYG000004763_41 | MGYG000004763_41_10 | 15007 | 16761 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000004763_41 | MGYG000004763_41_11 | 16786 | 19602 | - | 1.B.14.6.1 |
| pfam | MGYG000004763_41 | MGYG000004763_41_12 | 19633 | 21501 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000004763_41 | MGYG000004763_41_13 | 21513 | 24665 | - | 1.B.14.6.1 |
| CAZyme | MGYG000004763_41 | MGYG000004763_41_14 | 24847 | 26580 | - | CBM91 | GH43_12 |
Gene ID: MGYG000004763_41_1
Type: CAZyme
Location: 1 - 1203 (-)
Type: CAZyme
Location: 1 - 1203 (-)
Gene ID: MGYG000004763_41_2
Type: CAZyme
Location: 1300 - 3249 (-)
Type: CAZyme
Location: 1300 - 3249 (-)
Gene ID: MGYG000004763_41_3
Type: CAZyme
Location: 3258 - 4601 (-)
Type: CAZyme
Location: 3258 - 4601 (-)
Gene ID: MGYG000004763_41_4
Type:
Location: 4765 - 5214 (+)
Type:
Location: 4765 - 5214 (+)
Gene ID: MGYG000004763_41_5
Type: CAZyme
Location: 5546 - 7948 (-)
Type: CAZyme
Location: 5546 - 7948 (-)
Gene ID: MGYG000004763_41_6
Type: CAZyme
Location: 7994 - 9862 (-)
Type: CAZyme
Location: 7994 - 9862 (-)
Gene ID: MGYG000004763_41_7
Type: CAZyme
Location: 9859 - 11466 (-)
Type: CAZyme
Location: 9859 - 11466 (-)
Gene ID: MGYG000004763_41_8
Type: CAZyme
Location: 11606 - 13840 (-)
Type: CAZyme
Location: 11606 - 13840 (-)
Gene ID: MGYG000004763_41_9
Type: pfam
Location: 13931 - 14971 (-)
Type: pfam
Location: 13931 - 14971 (-)
Gene ID: MGYG000004763_41_10
Type: pfam
Location: 15007 - 16761 (-)
Type: pfam
Location: 15007 - 16761 (-)
Gene ID: MGYG000004763_41_11
Type: TC
Location: 16786 - 19602 (-)
Type: TC
Location: 16786 - 19602 (-)
Gene ID: MGYG000004763_41_12
Type: pfam
Location: 19633 - 21501 (-)
Type: pfam
Location: 19633 - 21501 (-)
Gene ID: MGYG000004763_41_13
Type: TC
Location: 21513 - 24665 (-)
Type: TC
Location: 21513 - 24665 (-)
Gene ID: MGYG000004763_41_14
Type: CAZyme
Location: 24847 - 26580 (-)
Type: CAZyme
Location: 24847 - 26580 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola_A
Species
Phocaeicola_A sp900291465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.