Cluster: MGYG000004748_CGC12
🧬 Cluster Details
- Gene Count: 32
- CAZyme Count: 23
- Substrate: xylan
- Genome ID: MGYG000004748
- CGC Family ID: CGCFAM_00273
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004748_2 | MGYG000004748_2_124 | 156143 | 157309 | + | CE1 |
| NULL(UNKNOWN) | MGYG000004748_2 | MGYG000004748_2_125 | 157295 | 157516 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_126 | 157654 | 160050 | + | GH146 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_127 | 160059 | 161966 | - | GH97 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_128 | 162047 | 164500 | - | GH31_4 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_129 | 164525 | 165889 | - | CBM6 | GH43_29 |
| TF | MGYG000004748_2 | MGYG000004748_2_130 | 165999 | 168950 | - | HTH_AraC |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_131 | 169103 | 170719 | + | CBM91 | GH43_12 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_132 | 170753 | 173296 | + | GH115 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_133 | 173359 | 174582 | + | CE15 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_134 | 174604 | 175989 | + | CBM6 | GH43_29 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_135 | 176012 | 177958 | + | GH97 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_136 | 177995 | 180373 | + | CBM91 | CE6 | GH43_10 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_137 | 180384 | 182966 | + | GH115 |
| TF | MGYG000004748_2 | MGYG000004748_2_138 | 183046 | 187140 | - | HTH_AraC |
| NULL(UNKNOWN) | MGYG000004748_2 | MGYG000004748_2_139 | 187193 | 187354 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_140 | 187305 | 189320 | - | GH67 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_141 | 189428 | 190411 | - | GH43_1 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_142 | 190440 | 191579 | - | GH10 |
| TC | MGYG000004748_2 | MGYG000004748_2_143 | 191806 | 193302 | - | 2.A.2.3.4 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_144 | 193355 | 194992 | - | CE20 | CE20 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_145 | 195038 | 196795 | - | GH35 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_146 | 197348 | 199183 | + | CE20 | CE20 |
| pfam | MGYG000004748_2 | MGYG000004748_2_147 | 199257 | 201425 | + | Glyco_hydro_20b |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_148 | 201487 | 203466 | + | GH120 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_149 | 203588 | 205648 | - | GH67 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_150 | 205661 | 208069 | - | GH115 |
| pfam | MGYG000004748_2 | MGYG000004748_2_151 | 208214 | 210157 | - | SusD_RagB | SusD-like_3 |
| TC | MGYG000004748_2 | MGYG000004748_2_152 | 210174 | 213239 | - | 1.B.14.6.1 |
| TF | MGYG000004748_2 | MGYG000004748_2_153 | 213724 | 217806 | + | HTH_AraC |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_154 | 217901 | 220648 | + | PL40 |
| CAZyme | MGYG000004748_2 | MGYG000004748_2_155 | 220645 | 222042 | + | GH28 |
Gene ID: MGYG000004748_2_124
Type: CAZyme
Location: 156143 - 157309 (+)
Type: CAZyme
Location: 156143 - 157309 (+)
Gene ID: MGYG000004748_2_125
Type:
Location: 157295 - 157516 (-)
Type:
Location: 157295 - 157516 (-)
Gene ID: MGYG000004748_2_126
Type: CAZyme
Location: 157654 - 160050 (+)
Type: CAZyme
Location: 157654 - 160050 (+)
Gene ID: MGYG000004748_2_127
Type: CAZyme
Location: 160059 - 161966 (-)
Type: CAZyme
Location: 160059 - 161966 (-)
Gene ID: MGYG000004748_2_128
Type: CAZyme
Location: 162047 - 164500 (-)
Type: CAZyme
Location: 162047 - 164500 (-)
Gene ID: MGYG000004748_2_129
Type: CAZyme
Location: 164525 - 165889 (-)
Type: CAZyme
Location: 164525 - 165889 (-)
Gene ID: MGYG000004748_2_130
Type: TF
Location: 165999 - 168950 (-)
Type: TF
Location: 165999 - 168950 (-)
Gene ID: MGYG000004748_2_131
Type: CAZyme
Location: 169103 - 170719 (+)
Type: CAZyme
Location: 169103 - 170719 (+)
Gene ID: MGYG000004748_2_132
Type: CAZyme
Location: 170753 - 173296 (+)
Type: CAZyme
Location: 170753 - 173296 (+)
Gene ID: MGYG000004748_2_133
Type: CAZyme
Location: 173359 - 174582 (+)
Type: CAZyme
Location: 173359 - 174582 (+)
Gene ID: MGYG000004748_2_134
Type: CAZyme
Location: 174604 - 175989 (+)
Type: CAZyme
Location: 174604 - 175989 (+)
Gene ID: MGYG000004748_2_135
Type: CAZyme
Location: 176012 - 177958 (+)
Type: CAZyme
Location: 176012 - 177958 (+)
Gene ID: MGYG000004748_2_136
Type: CAZyme
Location: 177995 - 180373 (+)
Type: CAZyme
Location: 177995 - 180373 (+)
Gene ID: MGYG000004748_2_137
Type: CAZyme
Location: 180384 - 182966 (+)
Type: CAZyme
Location: 180384 - 182966 (+)
Gene ID: MGYG000004748_2_138
Type: TF
Location: 183046 - 187140 (-)
Type: TF
Location: 183046 - 187140 (-)
Gene ID: MGYG000004748_2_139
Type:
Location: 187193 - 187354 (+)
Type:
Location: 187193 - 187354 (+)
Gene ID: MGYG000004748_2_140
Type: CAZyme
Location: 187305 - 189320 (-)
Type: CAZyme
Location: 187305 - 189320 (-)
Gene ID: MGYG000004748_2_141
Type: CAZyme
Location: 189428 - 190411 (-)
Type: CAZyme
Location: 189428 - 190411 (-)
Gene ID: MGYG000004748_2_142
Type: CAZyme
Location: 190440 - 191579 (-)
Type: CAZyme
Location: 190440 - 191579 (-)
Gene ID: MGYG000004748_2_143
Type: TC
Location: 191806 - 193302 (-)
Type: TC
Location: 191806 - 193302 (-)
Gene ID: MGYG000004748_2_144
Type: CAZyme
Location: 193355 - 194992 (-)
Type: CAZyme
Location: 193355 - 194992 (-)
Gene ID: MGYG000004748_2_145
Type: CAZyme
Location: 195038 - 196795 (-)
Type: CAZyme
Location: 195038 - 196795 (-)
Gene ID: MGYG000004748_2_146
Type: CAZyme
Location: 197348 - 199183 (+)
Type: CAZyme
Location: 197348 - 199183 (+)
Gene ID: MGYG000004748_2_147
Type: pfam
Location: 199257 - 201425 (+)
Type: pfam
Location: 199257 - 201425 (+)
Gene ID: MGYG000004748_2_148
Type: CAZyme
Location: 201487 - 203466 (+)
Type: CAZyme
Location: 201487 - 203466 (+)
Gene ID: MGYG000004748_2_149
Type: CAZyme
Location: 203588 - 205648 (-)
Type: CAZyme
Location: 203588 - 205648 (-)
Gene ID: MGYG000004748_2_150
Type: CAZyme
Location: 205661 - 208069 (-)
Type: CAZyme
Location: 205661 - 208069 (-)
Gene ID: MGYG000004748_2_151
Type: pfam
Location: 208214 - 210157 (-)
Type: pfam
Location: 208214 - 210157 (-)
Gene ID: MGYG000004748_2_152
Type: TC
Location: 210174 - 213239 (-)
Type: TC
Location: 210174 - 213239 (-)
Gene ID: MGYG000004748_2_153
Type: TF
Location: 213724 - 217806 (+)
Type: TF
Location: 213724 - 217806 (+)
Gene ID: MGYG000004748_2_154
Type: CAZyme
Location: 217901 - 220648 (+)
Type: CAZyme
Location: 217901 - 220648 (+)
Gene ID: MGYG000004748_2_155
Type: CAZyme
Location: 220645 - 222042 (+)
Type: CAZyme
Location: 220645 - 222042 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp905215345
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004748_2_127 | vegetarian > omnivore | 2.94008 | 0.03944 |