Cluster: MGYG000004746_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: MGYG000004746
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004746_13 | MGYG000004746_13_1 | 197 | 1639 | - | GH1 |
| TF | MGYG000004746_13 | MGYG000004746_13_2 | 1981 | 3018 | + | LacI |
| CAZyme | MGYG000004746_13 | MGYG000004746_13_3 | 3286 | 4725 | - | GH1 |
| TC | MGYG000004746_13 | MGYG000004746_13_4 | 4792 | 5925 | - | 4.A.3.1.1 |
| TC | MGYG000004746_13 | MGYG000004746_13_5 | 5874 | 6566 | - | 4.A.3.1.1 |
| TF | MGYG000004746_13 | MGYG000004746_13_6 | 6924 | 7928 | + | LacI |
| TC | MGYG000004746_13 | MGYG000004746_13_7 | 8143 | 8481 | + | 4.A.3.1.2 |
Gene ID: MGYG000004746_13_1
Type: CAZyme
Location: 197 - 1639 (-)
Type: CAZyme
Location: 197 - 1639 (-)
Gene ID: MGYG000004746_13_2
Type: TF
Location: 1981 - 3018 (+)
Type: TF
Location: 1981 - 3018 (+)
Gene ID: MGYG000004746_13_3
Type: CAZyme
Location: 3286 - 4725 (-)
Type: CAZyme
Location: 3286 - 4725 (-)
Gene ID: MGYG000004746_13_4
Type: TC
Location: 4792 - 5925 (-)
Type: TC
Location: 4792 - 5925 (-)
Gene ID: MGYG000004746_13_5
Type: TC
Location: 5874 - 6566 (-)
Type: TC
Location: 5874 - 6566 (-)
Gene ID: MGYG000004746_13_6
Type: TF
Location: 6924 - 7928 (+)
Type: TF
Location: 6924 - 7928 (+)
Gene ID: MGYG000004746_13_7
Type: TC
Location: 8143 - 8481 (+)
Type: TC
Location: 8143 - 8481 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905212545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004746_13_2 | vegetarian > omnivore | 1.03097 | 0.01940 |