Cluster: MGYG000004697_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004697
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004697_4 | MGYG000004697_4_6 | 5284 | 6720 | + | GT5 |
| pfam | MGYG000004697_4 | MGYG000004697_4_7 | 6880 | 7179 | - | Trns_repr_metal |
| STP | MGYG000004697_4 | MGYG000004697_4_8 | 7534 | 7791 | + | HMA |
| TC | MGYG000004697_4 | MGYG000004697_4_9 | 7804 | 10062 | + | 3.A.3.5.15 |
| pfam | MGYG000004697_4 | MGYG000004697_4_10 | 10175 | 12445 | + | Meth_synt_2 | Meth_synt_1 |
| TF | MGYG000004697_4 | MGYG000004697_4_11 | 12435 | 13337 | - | HTH_1 |
| TC | MGYG000004697_4 | MGYG000004697_4_12 | 13334 | 14005 | - | 9.B.143.2.3 |
| TC | MGYG000004697_4 | MGYG000004697_4_13 | 14201 | 14992 | + | 2.A.5.5.5 |
Gene ID: MGYG000004697_4_6
Type: CAZyme
Location: 5284 - 6720 (+)
Type: CAZyme
Location: 5284 - 6720 (+)
Gene ID: MGYG000004697_4_7
Type: pfam
Location: 6880 - 7179 (-)
Type: pfam
Location: 6880 - 7179 (-)
Gene ID: MGYG000004697_4_8
Type: STP
Location: 7534 - 7791 (+)
Type: STP
Location: 7534 - 7791 (+)
Gene ID: MGYG000004697_4_9
Type: TC
Location: 7804 - 10062 (+)
Type: TC
Location: 7804 - 10062 (+)
Gene ID: MGYG000004697_4_10
Type: pfam
Location: 10175 - 12445 (+)
Type: pfam
Location: 10175 - 12445 (+)
Gene ID: MGYG000004697_4_11
Type: TF
Location: 12435 - 13337 (-)
Type: TF
Location: 12435 - 13337 (-)
Gene ID: MGYG000004697_4_12
Type: TC
Location: 13334 - 14005 (-)
Type: TC
Location: 13334 - 14005 (-)
Gene ID: MGYG000004697_4_13
Type: TC
Location: 14201 - 14992 (+)
Type: TC
Location: 14201 - 14992 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Eubacterium_F
Species
Eubacterium_F sp905212635
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004697_4_7 | vegetarian > omnivore | 1.24468 | 0.01067 |
| MGYG000004697_4_7 | vegetarian > vegan | 2.33254 | 0.00305 |
| MGYG000004697_4_8 | vegetarian > vegan | 2.99079 | 0.00305 |
| MGYG000004697_4_11 | vegetarian > vegan | 1.46111 | 0.00305 |
| MGYG000004697_4_12 | vegetarian > vegan | 2.22170 | 0.00305 |
| MGYG000004697_4_13 | vegetarian > vegan | 1.93958 | 0.00305 |