Cluster: MGYG000004687_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004687
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004687_3 | MGYG000004687_3_60 | 63175 | 64206 | + | GT9 |
| TF | MGYG000004687_3 | MGYG000004687_3_61 | 64206 | 65087 | + | HTH_1 |
| pfam | MGYG000004687_3 | MGYG000004687_3_62 | 65090 | 65695 | - | DUF2057 |
| TC | MGYG000004687_3 | MGYG000004687_3_63 | 65832 | 66731 | + | 9.A.40.1.2 |
| pfam | MGYG000004687_3 | MGYG000004687_3_64 | 66869 | 68374 | + | CN_hydrolase | LNT_N |
| TC | MGYG000004687_3 | MGYG000004687_3_65 | 68517 | 70829 | + | 3.A.11.2.2 |
| pfam | MGYG000004687_3 | MGYG000004687_3_66 | 70834 | 72174 | - | ELFV_dehydrog | ELFV_dehydrog_N |
| CAZyme | MGYG000004687_3 | MGYG000004687_3_67 | 72489 | 73328 | - | GT2 |
| pfam | MGYG000004687_3 | MGYG000004687_3_68 | 73358 | 77296 | - | DEAD | Helicase_C | OB_NTP_bind | DUF3418 | AAA_19 | HA2_C |
| pfam | MGYG000004687_3 | MGYG000004687_3_69 | 77378 | 77989 | - | GrpE |
| TC | MGYG000004687_3 | MGYG000004687_3_70 | 78222 | 79301 | + | 3.A.1.11.1 |
| pfam | MGYG000004687_3 | MGYG000004687_3_71 | 79353 | 80357 | - | FBPase | FBPase_C |
| TC | MGYG000004687_3 | MGYG000004687_3_72 | 80503 | 81663 | - | 3.A.1.122.12 |
Gene ID: MGYG000004687_3_60
Type: CAZyme
Location: 63175 - 64206 (+)
Type: CAZyme
Location: 63175 - 64206 (+)
Gene ID: MGYG000004687_3_61
Type: TF
Location: 64206 - 65087 (+)
Type: TF
Location: 64206 - 65087 (+)
Gene ID: MGYG000004687_3_62
Type: pfam
Location: 65090 - 65695 (-)
Type: pfam
Location: 65090 - 65695 (-)
Gene ID: MGYG000004687_3_63
Type: TC
Location: 65832 - 66731 (+)
Type: TC
Location: 65832 - 66731 (+)
Gene ID: MGYG000004687_3_64
Type: pfam
Location: 66869 - 68374 (+)
Type: pfam
Location: 66869 - 68374 (+)
Gene ID: MGYG000004687_3_65
Type: TC
Location: 68517 - 70829 (+)
Type: TC
Location: 68517 - 70829 (+)
Gene ID: MGYG000004687_3_66
Type: pfam
Location: 70834 - 72174 (-)
Type: pfam
Location: 70834 - 72174 (-)
Gene ID: MGYG000004687_3_67
Type: CAZyme
Location: 72489 - 73328 (-)
Type: CAZyme
Location: 72489 - 73328 (-)
Gene ID: MGYG000004687_3_68
Type: pfam
Location: 73358 - 77296 (-)
Type: pfam
Location: 73358 - 77296 (-)
Gene ID: MGYG000004687_3_69
Type: pfam
Location: 77378 - 77989 (-)
Type: pfam
Location: 77378 - 77989 (-)
Gene ID: MGYG000004687_3_70
Type: TC
Location: 78222 - 79301 (+)
Type: TC
Location: 78222 - 79301 (+)
Gene ID: MGYG000004687_3_71
Type: pfam
Location: 79353 - 80357 (-)
Type: pfam
Location: 79353 - 80357 (-)
Gene ID: MGYG000004687_3_72
Type: TC
Location: 80503 - 81663 (-)
Type: TC
Location: 80503 - 81663 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_A
Species
Haemophilus_A parahaemolyticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.