Cluster: MGYG000004681_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004681
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004681_18 | MGYG000004681_18_9 | 7854 | 9296 | + | 3.A.1.8.1 |
| TC | MGYG000004681_18 | MGYG000004681_18_10 | 9300 | 10370 | + | 3.A.1.1.3 |
| pfam | MGYG000004681_18 | MGYG000004681_18_11 | 10818 | 12101 | + | HGD-D |
| TC | MGYG000004681_18 | MGYG000004681_18_12 | 12288 | 13898 | + | 3.A.1.5.11 |
| TC | MGYG000004681_18 | MGYG000004681_18_13 | 13987 | 14940 | + | 3.A.1.5.39 |
| TC | MGYG000004681_18 | MGYG000004681_18_14 | 14937 | 15767 | + | 3.A.1.5.39 |
| TC | MGYG000004681_18 | MGYG000004681_18_15 | 15771 | 16766 | + | 3.A.1.5.37 |
| TC | MGYG000004681_18 | MGYG000004681_18_16 | 16756 | 17541 | + | 3.A.1.5.36 |
| pfam | MGYG000004681_18 | MGYG000004681_18_17 | 17618 | 18781 | + | HGD-D |
| pfam | MGYG000004681_18 | MGYG000004681_18_18 | 18937 | 19701 | + | BcrAD_BadFG |
| CAZyme | MGYG000004681_18 | MGYG000004681_18_19 | 19714 | 20940 | + | GT4 |
Gene ID: MGYG000004681_18_9
Type: TC
Location: 7854 - 9296 (+)
Type: TC
Location: 7854 - 9296 (+)
Gene ID: MGYG000004681_18_10
Type: TC
Location: 9300 - 10370 (+)
Type: TC
Location: 9300 - 10370 (+)
Gene ID: MGYG000004681_18_11
Type: pfam
Location: 10818 - 12101 (+)
Type: pfam
Location: 10818 - 12101 (+)
Gene ID: MGYG000004681_18_12
Type: TC
Location: 12288 - 13898 (+)
Type: TC
Location: 12288 - 13898 (+)
Gene ID: MGYG000004681_18_13
Type: TC
Location: 13987 - 14940 (+)
Type: TC
Location: 13987 - 14940 (+)
Gene ID: MGYG000004681_18_14
Type: TC
Location: 14937 - 15767 (+)
Type: TC
Location: 14937 - 15767 (+)
Gene ID: MGYG000004681_18_15
Type: TC
Location: 15771 - 16766 (+)
Type: TC
Location: 15771 - 16766 (+)
Gene ID: MGYG000004681_18_16
Type: TC
Location: 16756 - 17541 (+)
Type: TC
Location: 16756 - 17541 (+)
Gene ID: MGYG000004681_18_17
Type: pfam
Location: 17618 - 18781 (+)
Type: pfam
Location: 17618 - 18781 (+)
Gene ID: MGYG000004681_18_18
Type: pfam
Location: 18937 - 19701 (+)
Type: pfam
Location: 18937 - 19701 (+)
Gene ID: MGYG000004681_18_19
Type: CAZyme
Location: 19714 - 20940 (+)
Type: CAZyme
Location: 19714 - 20940 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905209765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004681_18_12 | vegan > omnivore | 3.52141 | 0.00701 |
| MGYG000004681_18_12 | vegetarian > omnivore | 1.13191 | 0.03522 |
| MGYG000004681_18_13 | vegan > omnivore | 3.08046 | 0.00701 |
| MGYG000004681_18_13 | vegetarian > omnivore | 1.33040 | 0.03522 |
| MGYG000004681_18_14 | vegan > omnivore | 3.30487 | 0.00701 |
| MGYG000004681_18_14 | vegetarian > omnivore | 1.33711 | 0.03522 |
| MGYG000004681_18_16 | vegan > omnivore | 3.07287 | 0.00701 |
| MGYG000004681_18_16 | vegetarian > omnivore | 1.06317 | 0.03522 |