Cluster: MGYG000004681_CGC1
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004681
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004681_1 | MGYG000004681_1_56 | 63053 | 64429 | - | GH13_20 |
| TC | MGYG000004681_1 | MGYG000004681_1_57 | 64583 | 65779 | - | 2.A.1.2.18 |
| TC | MGYG000004681_1 | MGYG000004681_1_58 | 65901 | 68261 | - | 9.A.8.1.6 |
| pfam | MGYG000004681_1 | MGYG000004681_1_59 | 68724 | 69956 | + | Zn_Ribbon_1 |
| peptidase | MGYG000004681_1 | MGYG000004681_1_60 | 70349 | 71248 | - | S09.UPW |
| TC | MGYG000004681_1 | MGYG000004681_1_61 | 71495 | 72058 | + | 4.A.1.2.6 |
| TC | MGYG000004681_1 | MGYG000004681_1_62 | 72293 | 74227 | + | 9.B.97.5.1 |
| pfam | MGYG000004681_1 | MGYG000004681_1_63 | 74364 | 75767 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | MGYG000004681_1 | MGYG000004681_1_64 | 76019 | 76807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004681_1 | MGYG000004681_1_65 | 76967 | 77947 | + | 3.A.1.34.1 |
| TC | MGYG000004681_1 | MGYG000004681_1_66 | 78152 | 79075 | + | 3.A.1.34.1 |
| TC | MGYG000004681_1 | MGYG000004681_1_67 | 79068 | 79862 | + | 3.A.1.34.1 |
Gene ID: MGYG000004681_1_56
Type: CAZyme
Location: 63053 - 64429 (-)
Type: CAZyme
Location: 63053 - 64429 (-)
Gene ID: MGYG000004681_1_57
Type: TC
Location: 64583 - 65779 (-)
Type: TC
Location: 64583 - 65779 (-)
Gene ID: MGYG000004681_1_58
Type: TC
Location: 65901 - 68261 (-)
Type: TC
Location: 65901 - 68261 (-)
Gene ID: MGYG000004681_1_59
Type: pfam
Location: 68724 - 69956 (+)
Type: pfam
Location: 68724 - 69956 (+)
Gene ID: MGYG000004681_1_60
Type: peptidase
Location: 70349 - 71248 (-)
Type: peptidase
Location: 70349 - 71248 (-)
Gene ID: MGYG000004681_1_61
Type: TC
Location: 71495 - 72058 (+)
Type: TC
Location: 71495 - 72058 (+)
Gene ID: MGYG000004681_1_62
Type: TC
Location: 72293 - 74227 (+)
Type: TC
Location: 72293 - 74227 (+)
Gene ID: MGYG000004681_1_63
Type: pfam
Location: 74364 - 75767 (+)
Type: pfam
Location: 74364 - 75767 (+)
Gene ID: MGYG000004681_1_64
Type:
Location: 76019 - 76807 (+)
Type:
Location: 76019 - 76807 (+)
Gene ID: MGYG000004681_1_65
Type: TC
Location: 76967 - 77947 (+)
Type: TC
Location: 76967 - 77947 (+)
Gene ID: MGYG000004681_1_66
Type: TC
Location: 78152 - 79075 (+)
Type: TC
Location: 78152 - 79075 (+)
Gene ID: MGYG000004681_1_67
Type: TC
Location: 79068 - 79862 (+)
Type: TC
Location: 79068 - 79862 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp905209765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004681_1_59 | vegetarian > vegan | 16.28894 | 0.01332 |
| MGYG000004681_1_62 | vegan > omnivore | 1.41148 | 0.00701 |
| MGYG000004681_1_62 | vegetarian > omnivore | 1.51734 | 0.03522 |