Cluster: MGYG000004665_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004665
- CGC Family ID: CGCFAM_08239
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004665_12 | MGYG000004665_12_3 | 2260 | 3762 | - | GT4 |
| pfam | MGYG000004665_12 | MGYG000004665_12_4 | 3921 | 5516 | + | AA_permease | AA_permease_2 |
| TC | MGYG000004665_12 | MGYG000004665_12_5 | 5635 | 7473 | + | 2.A.3.14.3 |
| NULL(UNKNOWN) | MGYG000004665_12 | MGYG000004665_12_6 | 7639 | 7899 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000004665_12 | MGYG000004665_12_7 | 7896 | 8537 | - | UPF0029 | DUF1949 |
| TC | MGYG000004665_12 | MGYG000004665_12_8 | 8600 | 9925 | + | 3.A.11.1.1 |
| TC | MGYG000004665_12 | MGYG000004665_12_9 | 9918 | 10598 | + | 3.A.11.1.4 |
| pfam | MGYG000004665_12 | MGYG000004665_12_10 | 10731 | 11273 | + | Ribosomal_S30AE | Ribosom_S30AE_C |
| TC | MGYG000004665_12 | MGYG000004665_12_11 | 11479 | 13842 | + | 3.A.5.1.3 |
| pfam | MGYG000004665_12 | MGYG000004665_12_12 | 13986 | 15056 | + | RF-1 | PCRF |
| TF | MGYG000004665_12 | MGYG000004665_12_13 | 15115 | 15441 | + | PspC |
| TC | MGYG000004665_12 | MGYG000004665_12_14 | 15442 | 15798 | + | 1.E.40.3.4 |
Gene ID: MGYG000004665_12_3
Type: CAZyme
Location: 2260 - 3762 (-)
Type: CAZyme
Location: 2260 - 3762 (-)
Gene ID: MGYG000004665_12_4
Type: pfam
Location: 3921 - 5516 (+)
Type: pfam
Location: 3921 - 5516 (+)
Gene ID: MGYG000004665_12_5
Type: TC
Location: 5635 - 7473 (+)
Type: TC
Location: 5635 - 7473 (+)
Gene ID: MGYG000004665_12_6
Type:
Location: 7639 - 7899 (+)
Type:
Location: 7639 - 7899 (+)
Gene ID: MGYG000004665_12_7
Type: pfam
Location: 7896 - 8537 (-)
Type: pfam
Location: 7896 - 8537 (-)
Gene ID: MGYG000004665_12_8
Type: TC
Location: 8600 - 9925 (+)
Type: TC
Location: 8600 - 9925 (+)
Gene ID: MGYG000004665_12_9
Type: TC
Location: 9918 - 10598 (+)
Type: TC
Location: 9918 - 10598 (+)
Gene ID: MGYG000004665_12_10
Type: pfam
Location: 10731 - 11273 (+)
Type: pfam
Location: 10731 - 11273 (+)
Gene ID: MGYG000004665_12_11
Type: TC
Location: 11479 - 13842 (+)
Type: TC
Location: 11479 - 13842 (+)
Gene ID: MGYG000004665_12_12
Type: pfam
Location: 13986 - 15056 (+)
Type: pfam
Location: 13986 - 15056 (+)
Gene ID: MGYG000004665_12_13
Type: TF
Location: 15115 - 15441 (+)
Type: TF
Location: 15115 - 15441 (+)
Gene ID: MGYG000004665_12_14
Type: TC
Location: 15442 - 15798 (+)
Type: TC
Location: 15442 - 15798 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Limosilactobacillus
Species
Limosilactobacillus merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.