Cluster: MGYG000004654_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004654
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004654_14 | MGYG000004654_14_22 | 28044 | 28727 | - | 3.A.1.24.5 |
| TC | MGYG000004654_14 | MGYG000004654_14_23 | 28728 | 29510 | - | 3.A.1.24.1 |
| CAZyme | MGYG000004654_14 | MGYG000004654_14_24 | 29866 | 31179 | + | GT4 |
| STP | MGYG000004654_14 | MGYG000004654_14_25 | 31275 | 32558 | + | Aminotran_1_2 |
| TC | MGYG000004654_14 | MGYG000004654_14_26 | 32558 | 33160 | + | 9.B.18.1.2 |
| pfam | MGYG000004654_14 | MGYG000004654_14_27 | 33396 | 34439 | - | tRNA-synt_1b |
| pfam | MGYG000004654_14 | MGYG000004654_14_28 | 34608 | 35246 | + | LUD_dom |
| TC | MGYG000004654_14 | MGYG000004654_14_29 | 35803 | 36459 | + | 2.A.115.2.10 |
| pfam | MGYG000004654_14 | MGYG000004654_14_30 | 36742 | 39075 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| STP | MGYG000004654_14 | MGYG000004654_14_31 | 39160 | 40413 | - | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| TC | MGYG000004654_14 | MGYG000004654_14_32 | 40508 | 43066 | - | 3.A.11.3.1 |
Gene ID: MGYG000004654_14_22
Type: TC
Location: 28044 - 28727 (-)
Type: TC
Location: 28044 - 28727 (-)
Gene ID: MGYG000004654_14_23
Type: TC
Location: 28728 - 29510 (-)
Type: TC
Location: 28728 - 29510 (-)
Gene ID: MGYG000004654_14_24
Type: CAZyme
Location: 29866 - 31179 (+)
Type: CAZyme
Location: 29866 - 31179 (+)
Gene ID: MGYG000004654_14_25
Type: STP
Location: 31275 - 32558 (+)
Type: STP
Location: 31275 - 32558 (+)
Gene ID: MGYG000004654_14_26
Type: TC
Location: 32558 - 33160 (+)
Type: TC
Location: 32558 - 33160 (+)
Gene ID: MGYG000004654_14_27
Type: pfam
Location: 33396 - 34439 (-)
Type: pfam
Location: 33396 - 34439 (-)
Gene ID: MGYG000004654_14_28
Type: pfam
Location: 34608 - 35246 (+)
Type: pfam
Location: 34608 - 35246 (+)
Gene ID: MGYG000004654_14_29
Type: TC
Location: 35803 - 36459 (+)
Type: TC
Location: 35803 - 36459 (+)
Gene ID: MGYG000004654_14_30
Type: pfam
Location: 36742 - 39075 (-)
Type: pfam
Location: 36742 - 39075 (-)
Gene ID: MGYG000004654_14_31
Type: STP
Location: 39160 - 40413 (-)
Type: STP
Location: 39160 - 40413 (-)
Gene ID: MGYG000004654_14_32
Type: TC
Location: 40508 - 43066 (-)
Type: TC
Location: 40508 - 43066 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
Senegalimassilia
Species
Senegalimassilia sp905215325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004654_14_24 | vegan > omnivore | 1.96095 | 0.04329 |
| MGYG000004654_14_24 | vegetarian > omnivore | 1.74842 | 0.00557 |
| MGYG000004654_14_25 | vegan > omnivore | 1.10103 | 0.04329 |
| MGYG000004654_14_25 | vegetarian > omnivore | 1.60008 | 0.00557 |
| MGYG000004654_14_26 | vegan > omnivore | 1.34625 | 0.04329 |
| MGYG000004654_14_26 | vegetarian > omnivore | 1.58324 | 0.00557 |
| MGYG000004654_14_28 | vegan > omnivore | 2.08729 | 0.04329 |
| MGYG000004654_14_28 | vegetarian > omnivore | 2.14503 | 0.00557 |