Cluster: MGYG000004619_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000004619
- CGC Family ID: CGCFAM_00002
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004619_7 | MGYG000004619_7_15 | 18215 | 18880 | + | 9.B.18.1.2 |
| CAZyme | MGYG000004619_7 | MGYG000004619_7_16 | 18881 | 19966 | + | GT4 |
| CAZyme | MGYG000004619_7 | MGYG000004619_7_17 | 19985 | 21226 | + | GT4 |
| pfam | MGYG000004619_7 | MGYG000004619_7_18 | 21229 | 22374 | + | EpsG |
| CAZyme | MGYG000004619_7 | MGYG000004619_7_19 | 22376 | 23335 | + | GT2 |
| CAZyme | MGYG000004619_7 | MGYG000004619_7_20 | 23320 | 24297 | + | GT2 |
Gene ID: MGYG000004619_7_15
Type: TC
Location: 18215 - 18880 (+)
Type: TC
Location: 18215 - 18880 (+)
Gene ID: MGYG000004619_7_16
Type: CAZyme
Location: 18881 - 19966 (+)
Type: CAZyme
Location: 18881 - 19966 (+)
Gene ID: MGYG000004619_7_17
Type: CAZyme
Location: 19985 - 21226 (+)
Type: CAZyme
Location: 19985 - 21226 (+)
Gene ID: MGYG000004619_7_18
Type: pfam
Location: 21229 - 22374 (+)
Type: pfam
Location: 21229 - 22374 (+)
Gene ID: MGYG000004619_7_19
Type: CAZyme
Location: 22376 - 23335 (+)
Type: CAZyme
Location: 22376 - 23335 (+)
Gene ID: MGYG000004619_7_20
Type: CAZyme
Location: 23320 - 24297 (+)
Type: CAZyme
Location: 23320 - 24297 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902497065
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.