Cluster: MGYG000004602_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004602
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004602_22 | MGYG000004602_22_6 | 4709 | 5926 | - | GT4 |
| pfam | MGYG000004602_22 | MGYG000004602_22_7 | 5941 | 6705 | - | BcrAD_BadFG |
| pfam | MGYG000004602_22 | MGYG000004602_22_8 | 6861 | 8024 | - | HGD-D |
| TC | MGYG000004602_22 | MGYG000004602_22_9 | 8101 | 8886 | - | 3.A.1.5.36 |
| TC | MGYG000004602_22 | MGYG000004602_22_10 | 8876 | 9871 | - | 3.A.1.5.37 |
| TC | MGYG000004602_22 | MGYG000004602_22_11 | 9875 | 10705 | - | 3.A.1.5.39 |
| TC | MGYG000004602_22 | MGYG000004602_22_12 | 10702 | 11655 | - | 3.A.1.5.11 |
| TC | MGYG000004602_22 | MGYG000004602_22_13 | 11744 | 13354 | - | 3.A.1.5.11 |
| pfam | MGYG000004602_22 | MGYG000004602_22_14 | 13539 | 14822 | - | HGD-D |
| TC | MGYG000004602_22 | MGYG000004602_22_15 | 15252 | 16322 | - | 3.A.1.1.3 |
| TC | MGYG000004602_22 | MGYG000004602_22_16 | 16326 | 17768 | - | 3.A.1.8.1 |
Gene ID: MGYG000004602_22_6
Type: CAZyme
Location: 4709 - 5926 (-)
Type: CAZyme
Location: 4709 - 5926 (-)
Gene ID: MGYG000004602_22_7
Type: pfam
Location: 5941 - 6705 (-)
Type: pfam
Location: 5941 - 6705 (-)
Gene ID: MGYG000004602_22_8
Type: pfam
Location: 6861 - 8024 (-)
Type: pfam
Location: 6861 - 8024 (-)
Gene ID: MGYG000004602_22_9
Type: TC
Location: 8101 - 8886 (-)
Type: TC
Location: 8101 - 8886 (-)
Gene ID: MGYG000004602_22_10
Type: TC
Location: 8876 - 9871 (-)
Type: TC
Location: 8876 - 9871 (-)
Gene ID: MGYG000004602_22_11
Type: TC
Location: 9875 - 10705 (-)
Type: TC
Location: 9875 - 10705 (-)
Gene ID: MGYG000004602_22_12
Type: TC
Location: 10702 - 11655 (-)
Type: TC
Location: 10702 - 11655 (-)
Gene ID: MGYG000004602_22_13
Type: TC
Location: 11744 - 13354 (-)
Type: TC
Location: 11744 - 13354 (-)
Gene ID: MGYG000004602_22_14
Type: pfam
Location: 13539 - 14822 (-)
Type: pfam
Location: 13539 - 14822 (-)
Gene ID: MGYG000004602_22_15
Type: TC
Location: 15252 - 16322 (-)
Type: TC
Location: 15252 - 16322 (-)
Gene ID: MGYG000004602_22_16
Type: TC
Location: 16326 - 17768 (-)
Type: TC
Location: 16326 - 17768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900551555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004602_22_6 | vegan > omnivore | 1.29904 | 0.02132 |
| MGYG000004602_22_9 | vegan > omnivore | 2.04163 | 0.03857 |
| MGYG000004602_22_11 | vegan > omnivore | 1.94947 | 0.03857 |
| MGYG000004602_22_12 | vegan > omnivore | 2.01852 | 0.02132 |
| MGYG000004602_22_13 | vegan > omnivore | 2.31724 | 0.03857 |