Cluster: MGYG000004590_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004590
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004590_77 | MGYG000004590_77_2 | 439 | 2217 | - | 4.A.3.1.1 |
| TF | MGYG000004590_77 | MGYG000004590_77_3 | 2493 | 3503 | + | LacI |
| TC | MGYG000004590_77 | MGYG000004590_77_4 | 3761 | 5521 | - | 4.A.3.1.1 |
| CAZyme | MGYG000004590_77 | MGYG000004590_77_5 | 5698 | 7140 | - | GH1 |
| TF | MGYG000004590_77 | MGYG000004590_77_6 | 7482 | 8519 | + | LacI |
| CAZyme | MGYG000004590_77 | MGYG000004590_77_7 | 8786 | 10228 | - | GH1 |
Gene ID: MGYG000004590_77_2
Type: TC
Location: 439 - 2217 (-)
Type: TC
Location: 439 - 2217 (-)
Gene ID: MGYG000004590_77_3
Type: TF
Location: 2493 - 3503 (+)
Type: TF
Location: 2493 - 3503 (+)
Gene ID: MGYG000004590_77_4
Type: TC
Location: 3761 - 5521 (-)
Type: TC
Location: 3761 - 5521 (-)
Gene ID: MGYG000004590_77_5
Type: CAZyme
Location: 5698 - 7140 (-)
Type: CAZyme
Location: 5698 - 7140 (-)
Gene ID: MGYG000004590_77_6
Type: TF
Location: 7482 - 8519 (+)
Type: TF
Location: 7482 - 8519 (+)
Gene ID: MGYG000004590_77_7
Type: CAZyme
Location: 8786 - 10228 (-)
Type: CAZyme
Location: 8786 - 10228 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902496775
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004590_77_6 | vegetarian > omnivore | 1.11637 | 0.01867 |