Cluster: MGYG000004516_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: MGYG000004516
- CGC Family ID: CGCFAM_02344
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004516_1 | MGYG000004516_1_14 | 16458 | 17318 | + | GT2 |
| TC | MGYG000004516_1 | MGYG000004516_1_15 | 17305 | 18666 | + | 9.B.67.3.2 |
| CAZyme | MGYG000004516_1 | MGYG000004516_1_16 | 18627 | 19340 | + | GT32 |
| CAZyme | MGYG000004516_1 | MGYG000004516_1_17 | 19342 | 20169 | + | GT2 |
| pfam | MGYG000004516_1 | MGYG000004516_1_18 | 20162 | 21250 | + | Glyphos_transf |
| CAZyme | MGYG000004516_1 | MGYG000004516_1_19 | 21253 | 21996 | + | GT2 |
| TC | MGYG000004516_1 | MGYG000004516_1_20 | 21997 | 23262 | + | 9.B.18.1.3 |
Gene ID: MGYG000004516_1_14
Type: CAZyme
Location: 16458 - 17318 (+)
Type: CAZyme
Location: 16458 - 17318 (+)
Gene ID: MGYG000004516_1_15
Type: TC
Location: 17305 - 18666 (+)
Type: TC
Location: 17305 - 18666 (+)
Gene ID: MGYG000004516_1_16
Type: CAZyme
Location: 18627 - 19340 (+)
Type: CAZyme
Location: 18627 - 19340 (+)
Gene ID: MGYG000004516_1_17
Type: CAZyme
Location: 19342 - 20169 (+)
Type: CAZyme
Location: 19342 - 20169 (+)
Gene ID: MGYG000004516_1_18
Type: pfam
Location: 20162 - 21250 (+)
Type: pfam
Location: 20162 - 21250 (+)
Gene ID: MGYG000004516_1_19
Type: CAZyme
Location: 21253 - 21996 (+)
Type: CAZyme
Location: 21253 - 21996 (+)
Gene ID: MGYG000004516_1_20
Type: TC
Location: 21997 - 23262 (+)
Type: TC
Location: 21997 - 23262 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Leptotrichiaceae
Genus
Sneathia
Species
Sneathia vaginalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.