Cluster: MGYG000004480_CGC7
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004480
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004480_2 | MGYG000004480_2_135 | 168755 | 169924 | - | CE9 |
| STP | MGYG000004480_2 | MGYG000004480_2_136 | 170042 | 171208 | - | SIS | SIS |
| TF | MGYG000004480_2 | MGYG000004480_2_137 | 171320 | 172054 | - | GntR |
| TC | MGYG000004480_2 | MGYG000004480_2_138 | 172142 | 172570 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000004480_2 | MGYG000004480_2_139 | 172652 | 173275 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004480_2 | MGYG000004480_2_140 | 173464 | 174303 | - | 4.A.6.1.18 |
| TC | MGYG000004480_2 | MGYG000004480_2_141 | 174293 | 175180 | - | 4.A.6.1.18 |
| TC | MGYG000004480_2 | MGYG000004480_2_142 | 175274 | 175738 | - | 4.A.6.1.18 |
| CAZyme | MGYG000004480_2 | MGYG000004480_2_143 | 175741 | 177537 | - | GH35 |
Gene ID: MGYG000004480_2_135
Type: CAZyme
Location: 168755 - 169924 (-)
Type: CAZyme
Location: 168755 - 169924 (-)
Gene ID: MGYG000004480_2_136
Type: STP
Location: 170042 - 171208 (-)
Type: STP
Location: 170042 - 171208 (-)
Gene ID: MGYG000004480_2_137
Type: TF
Location: 171320 - 172054 (-)
Type: TF
Location: 171320 - 172054 (-)
Gene ID: MGYG000004480_2_138
Type: TC
Location: 172142 - 172570 (-)
Type: TC
Location: 172142 - 172570 (-)
Gene ID: MGYG000004480_2_139
Type:
Location: 172652 - 173275 (-)
Type:
Location: 172652 - 173275 (-)
Gene ID: MGYG000004480_2_140
Type: TC
Location: 173464 - 174303 (-)
Type: TC
Location: 173464 - 174303 (-)
Gene ID: MGYG000004480_2_141
Type: TC
Location: 174293 - 175180 (-)
Type: TC
Location: 174293 - 175180 (-)
Gene ID: MGYG000004480_2_142
Type: TC
Location: 175274 - 175738 (-)
Type: TC
Location: 175274 - 175738 (-)
Gene ID: MGYG000004480_2_143
Type: CAZyme
Location: 175741 - 177537 (-)
Type: CAZyme
Location: 175741 - 177537 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902475615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004480_2_140 | vegetarian > vegan | 2.81333 | 0.02017 |
| MGYG000004480_2_142 | vegetarian > vegan | 3.69477 | 0.02017 |
| MGYG000004480_2_143 | vegetarian > vegan | 3.04552 | 0.02790 |