Cluster: MGYG000004419_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004419
- CGC Family ID: CGCFAM_00289
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004419_17 | MGYG000004419_17_11 | 11404 | 12798 | + | CE4 |
| CAZyme | MGYG000004419_17 | MGYG000004419_17_12 | 12994 | 14436 | + | CE4 |
| STP | MGYG000004419_17 | MGYG000004419_17_13 | 14787 | 16667 | + | CBS | CBS |
| TC | MGYG000004419_17 | MGYG000004419_17_14 | 16675 | 17922 | + | 2.A.55.3.6 |
| TF | MGYG000004419_17 | MGYG000004419_17_15 | 18424 | 18801 | + | GntR |
| TC | MGYG000004419_17 | MGYG000004419_17_16 | 18804 | 19796 | + | 3.A.1.149.1 |
Gene ID: MGYG000004419_17_11
Type: CAZyme
Location: 11404 - 12798 (+)
Type: CAZyme
Location: 11404 - 12798 (+)
Gene ID: MGYG000004419_17_12
Type: CAZyme
Location: 12994 - 14436 (+)
Type: CAZyme
Location: 12994 - 14436 (+)
Gene ID: MGYG000004419_17_13
Type: STP
Location: 14787 - 16667 (+)
Type: STP
Location: 14787 - 16667 (+)
Gene ID: MGYG000004419_17_14
Type: TC
Location: 16675 - 17922 (+)
Type: TC
Location: 16675 - 17922 (+)
Gene ID: MGYG000004419_17_15
Type: TF
Location: 18424 - 18801 (+)
Type: TF
Location: 18424 - 18801 (+)
Gene ID: MGYG000004419_17_16
Type: TC
Location: 18804 - 19796 (+)
Type: TC
Location: 18804 - 19796 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella phocaeensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.