Cluster: MGYG000004412_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004412
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004412_8 | MGYG000004412_8_29 | 31073 | 31750 | + | 9.B.120.1.5 |
| TC | MGYG000004412_8 | MGYG000004412_8_30 | 32317 | 33060 | - | 1.A.16.2.4 |
| pfam | MGYG000004412_8 | MGYG000004412_8_31 | 33198 | 33998 | + | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| pfam | MGYG000004412_8 | MGYG000004412_8_32 | 34112 | 34525 | - | ATP-synt_DE | ATP-synt_DE_N |
| TC | MGYG000004412_8 | MGYG000004412_8_33 | 34535 | 35917 | - | 3.A.2.1.5 |
| TC | MGYG000004412_8 | MGYG000004412_8_34 | 35930 | 36802 | - | 3.A.2.1.5 |
| TC | MGYG000004412_8 | MGYG000004412_8_35 | 36836 | 39115 | - | 3.A.2.1.5 |
| pfam | MGYG000004412_8 | MGYG000004412_8_36 | 39123 | 39563 | - | ATP-synt_B |
| TC | MGYG000004412_8 | MGYG000004412_8_37 | 39602 | 39832 | - | 3.A.2.1.6 |
| TC | MGYG000004412_8 | MGYG000004412_8_38 | 39880 | 40551 | - | 3.A.2.1.6 |
| NULL(UNKNOWN) | MGYG000004412_8 | MGYG000004412_8_39 | 40569 | 40895 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | MGYG000004412_8 | MGYG000004412_8_40 | 41141 | 42079 | - | ROK |
| CAZyme | MGYG000004412_8 | MGYG000004412_8_41 | 42354 | 43970 | + | GH13_31 |
| TC | MGYG000004412_8 | MGYG000004412_8_42 | 44330 | 45748 | + | 2.A.25.1.3 |
Gene ID: MGYG000004412_8_29
Type: TC
Location: 31073 - 31750 (+)
Type: TC
Location: 31073 - 31750 (+)
Gene ID: MGYG000004412_8_30
Type: TC
Location: 32317 - 33060 (-)
Type: TC
Location: 32317 - 33060 (-)
Gene ID: MGYG000004412_8_31
Type: pfam
Location: 33198 - 33998 (+)
Type: pfam
Location: 33198 - 33998 (+)
Gene ID: MGYG000004412_8_32
Type: pfam
Location: 34112 - 34525 (-)
Type: pfam
Location: 34112 - 34525 (-)
Gene ID: MGYG000004412_8_33
Type: TC
Location: 34535 - 35917 (-)
Type: TC
Location: 34535 - 35917 (-)
Gene ID: MGYG000004412_8_34
Type: TC
Location: 35930 - 36802 (-)
Type: TC
Location: 35930 - 36802 (-)
Gene ID: MGYG000004412_8_35
Type: TC
Location: 36836 - 39115 (-)
Type: TC
Location: 36836 - 39115 (-)
Gene ID: MGYG000004412_8_36
Type: pfam
Location: 39123 - 39563 (-)
Type: pfam
Location: 39123 - 39563 (-)
Gene ID: MGYG000004412_8_37
Type: TC
Location: 39602 - 39832 (-)
Type: TC
Location: 39602 - 39832 (-)
Gene ID: MGYG000004412_8_38
Type: TC
Location: 39880 - 40551 (-)
Type: TC
Location: 39880 - 40551 (-)
Gene ID: MGYG000004412_8_39
Type:
Location: 40569 - 40895 (-)
Type:
Location: 40569 - 40895 (-)
Gene ID: MGYG000004412_8_40
Type: pfam
Location: 41141 - 42079 (-)
Type: pfam
Location: 41141 - 42079 (-)
Gene ID: MGYG000004412_8_41
Type: CAZyme
Location: 42354 - 43970 (+)
Type: CAZyme
Location: 42354 - 43970 (+)
Gene ID: MGYG000004412_8_42
Type: TC
Location: 44330 - 45748 (+)
Type: TC
Location: 44330 - 45748 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Oscillospiraceae
Genus
Vescimonas
Species
Vescimonas sp900313295
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004412_8_32 | vegetarian > omnivore | 1.35735 | 0.00933 |
| MGYG000004412_8_32 | vegetarian > vegan | 1.39454 | 0.00141 |
| MGYG000004412_8_37 | vegetarian > omnivore | 2.19557 | 0.00933 |
| MGYG000004412_8_38 | vegetarian > omnivore | 1.85755 | 0.00933 |