Cluster: MGYG000004407_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004407
- CGC Family ID: CGCFAM_01290
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004407_22 | MGYG000004407_22_12 | 13366 | 13854 | + | 4.A.6.1.16 |
| TC | MGYG000004407_22 | MGYG000004407_22_13 | 13870 | 14643 | + | 4.A.6.1.13 |
| pfam | MGYG000004407_22 | MGYG000004407_22_14 | 14636 | 15271 | + | EIID-AGA | EIID-AGA |
| pfam | MGYG000004407_22 | MGYG000004407_22_15 | 15305 | 15709 | + | EIIA-man |
| CAZyme | MGYG000004407_22 | MGYG000004407_22_16 | 15739 | 17175 | + | GH32 |
Gene ID: MGYG000004407_22_12
Type: TC
Location: 13366 - 13854 (+)
Type: TC
Location: 13366 - 13854 (+)
Gene ID: MGYG000004407_22_13
Type: TC
Location: 13870 - 14643 (+)
Type: TC
Location: 13870 - 14643 (+)
Gene ID: MGYG000004407_22_14
Type: pfam
Location: 14636 - 15271 (+)
Type: pfam
Location: 14636 - 15271 (+)
Gene ID: MGYG000004407_22_15
Type: pfam
Location: 15305 - 15709 (+)
Type: pfam
Location: 15305 - 15709 (+)
Gene ID: MGYG000004407_22_16
Type: CAZyme
Location: 15739 - 17175 (+)
Type: CAZyme
Location: 15739 - 17175 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902494935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004407_22_12 | vegetarian > omnivore | 1.56873 | 0.02242 |
| MGYG000004407_22_12 | vegetarian > vegan | 1.09828 | 0.02017 |