Cluster: MGYG000004375_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004375
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004375_76 | MGYG000004375_76_6 | 2640 | 2933 | - | 4.A.3.2.6 |
| CAZyme | MGYG000004375_76 | MGYG000004375_76_7 | 2949 | 4277 | - | GH4 |
| TF | MGYG000004375_76 | MGYG000004375_76_8 | 4347 | 6248 | - | HTH_11 |
| TC | MGYG000004375_76 | MGYG000004375_76_9 | 6259 | 7521 | - | 4.A.3.2.6 |
Gene ID: MGYG000004375_76_6
Type: TC
Location: 2640 - 2933 (-)
Type: TC
Location: 2640 - 2933 (-)
Gene ID: MGYG000004375_76_7
Type: CAZyme
Location: 2949 - 4277 (-)
Type: CAZyme
Location: 2949 - 4277 (-)
Gene ID: MGYG000004375_76_8
Type: TF
Location: 4347 - 6248 (-)
Type: TF
Location: 4347 - 6248 (-)
Gene ID: MGYG000004375_76_9
Type: TC
Location: 6259 - 7521 (-)
Type: TC
Location: 6259 - 7521 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900754615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004375_76_6 | vegetarian > omnivore | 2.47237 | 0.01332 |
| MGYG000004375_76_7 | vegan > omnivore | 1.83566 | 0.00574 |
| MGYG000004375_76_8 | vegan > omnivore | 3.32446 | 0.00574 |
| MGYG000004375_76_8 | vegetarian > omnivore | 3.70734 | 0.01332 |