Cluster: MGYG000004375_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004375
- CGC Family ID: CGCFAM_00092
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004375_58 | MGYG000004375_58_1 | 1 | 1956 | + | 3.A.3.32.6 |
| TF | MGYG000004375_58 | MGYG000004375_58_2 | 2050 | 2886 | - | HTH_AraC |
| STP | MGYG000004375_58 | MGYG000004375_58_3 | 3067 | 4395 | + | SBP_bac_1 |
| TC | MGYG000004375_58 | MGYG000004375_58_4 | 4457 | 5338 | + | 3.A.1.1.25 |
| TC | MGYG000004375_58 | MGYG000004375_58_5 | 5350 | 6210 | + | 3.A.1.1.18 |
| pfam | MGYG000004375_58 | MGYG000004375_58_6 | 6221 | 6394 | + | DUF6903 |
| TC | MGYG000004375_58 | MGYG000004375_58_7 | 6406 | 7497 | + | 3.A.1.1.26 |
| CAZyme | MGYG000004375_58 | MGYG000004375_58_8 | 7515 | 9659 | + | GH112 |
Gene ID: MGYG000004375_58_1
Type: TC
Location: 1 - 1956 (+)
Type: TC
Location: 1 - 1956 (+)
Gene ID: MGYG000004375_58_2
Type: TF
Location: 2050 - 2886 (-)
Type: TF
Location: 2050 - 2886 (-)
Gene ID: MGYG000004375_58_3
Type: STP
Location: 3067 - 4395 (+)
Type: STP
Location: 3067 - 4395 (+)
Gene ID: MGYG000004375_58_4
Type: TC
Location: 4457 - 5338 (+)
Type: TC
Location: 4457 - 5338 (+)
Gene ID: MGYG000004375_58_5
Type: TC
Location: 5350 - 6210 (+)
Type: TC
Location: 5350 - 6210 (+)
Gene ID: MGYG000004375_58_6
Type: pfam
Location: 6221 - 6394 (+)
Type: pfam
Location: 6221 - 6394 (+)
Gene ID: MGYG000004375_58_7
Type: TC
Location: 6406 - 7497 (+)
Type: TC
Location: 6406 - 7497 (+)
Gene ID: MGYG000004375_58_8
Type: CAZyme
Location: 7515 - 9659 (+)
Type: CAZyme
Location: 7515 - 9659 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900754615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004375_58_4 | vegan > omnivore | 2.04526 | 0.00574 |
| MGYG000004375_58_4 | vegetarian > omnivore | 2.13143 | 0.01332 |
| MGYG000004375_58_6 | vegetarian > omnivore | 1.96282 | 0.01332 |
| MGYG000004375_58_6 | vegetarian > vegan | 2.42156 | 0.04105 |