Cluster: MGYG000004375_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004375
- CGC Family ID: CGCFAM_06073
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004375_15 | MGYG000004375_15_4 | 3127 | 4764 | - | 3.A.1.106.2 |
| TC | MGYG000004375_15 | MGYG000004375_15_5 | 4754 | 6436 | - | 3.A.1.106.12 |
| pfam | MGYG000004375_15 | MGYG000004375_15_6 | 6545 | 7120 | - | Pro_isomerase |
| CAZyme | MGYG000004375_15 | MGYG000004375_15_7 | 7177 | 8646 | - | GH77 |
Gene ID: MGYG000004375_15_4
Type: TC
Location: 3127 - 4764 (-)
Type: TC
Location: 3127 - 4764 (-)
Gene ID: MGYG000004375_15_5
Type: TC
Location: 4754 - 6436 (-)
Type: TC
Location: 4754 - 6436 (-)
Gene ID: MGYG000004375_15_6
Type: pfam
Location: 6545 - 7120 (-)
Type: pfam
Location: 6545 - 7120 (-)
Gene ID: MGYG000004375_15_7
Type: CAZyme
Location: 7177 - 8646 (-)
Type: CAZyme
Location: 7177 - 8646 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Holdemanella
Species
Holdemanella sp900754615
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004375_15_4 | vegan > omnivore | 1.78713 | 0.00574 |
| MGYG000004375_15_4 | vegetarian > omnivore | 2.46469 | 0.01332 |
| MGYG000004375_15_5 | vegan > omnivore | 1.70683 | 0.00574 |
| MGYG000004375_15_5 | vegetarian > omnivore | 3.29064 | 0.01332 |