Cluster: MGYG000004367_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004367
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004367_1 | MGYG000004367_1_93 | 108970 | 110139 | - | CE9 |
| STP | MGYG000004367_1 | MGYG000004367_1_94 | 110256 | 111422 | - | SIS | SIS |
| TF | MGYG000004367_1 | MGYG000004367_1_95 | 111534 | 112268 | - | GntR |
| TC | MGYG000004367_1 | MGYG000004367_1_96 | 112356 | 112784 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000004367_1 | MGYG000004367_1_97 | 112866 | 113489 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004367_1 | MGYG000004367_1_98 | 113678 | 114517 | - | 4.A.6.1.18 |
| TC | MGYG000004367_1 | MGYG000004367_1_99 | 114507 | 115394 | - | 4.A.6.1.18 |
| TC | MGYG000004367_1 | MGYG000004367_1_100 | 115488 | 115952 | - | 4.A.6.1.18 |
| CAZyme | MGYG000004367_1 | MGYG000004367_1_101 | 115955 | 117751 | - | GH35 |
| pfam | MGYG000004367_1 | MGYG000004367_1_102 | 118237 | 118668 | - | DUF386 |
| CAZyme | MGYG000004367_1 | MGYG000004367_1_103 | 118743 | 119912 | - | CE9 |
| TF | MGYG000004367_1 | MGYG000004367_1_104 | 120056 | 120787 | - | GntR |
| TC | MGYG000004367_1 | MGYG000004367_1_105 | 121020 | 122507 | - | 4.A.1.1.7 |
Gene ID: MGYG000004367_1_93
Type: CAZyme
Location: 108970 - 110139 (-)
Type: CAZyme
Location: 108970 - 110139 (-)
Gene ID: MGYG000004367_1_94
Type: STP
Location: 110256 - 111422 (-)
Type: STP
Location: 110256 - 111422 (-)
Gene ID: MGYG000004367_1_95
Type: TF
Location: 111534 - 112268 (-)
Type: TF
Location: 111534 - 112268 (-)
Gene ID: MGYG000004367_1_96
Type: TC
Location: 112356 - 112784 (-)
Type: TC
Location: 112356 - 112784 (-)
Gene ID: MGYG000004367_1_97
Type:
Location: 112866 - 113489 (-)
Type:
Location: 112866 - 113489 (-)
Gene ID: MGYG000004367_1_98
Type: TC
Location: 113678 - 114517 (-)
Type: TC
Location: 113678 - 114517 (-)
Gene ID: MGYG000004367_1_99
Type: TC
Location: 114507 - 115394 (-)
Type: TC
Location: 114507 - 115394 (-)
Gene ID: MGYG000004367_1_100
Type: TC
Location: 115488 - 115952 (-)
Type: TC
Location: 115488 - 115952 (-)
Gene ID: MGYG000004367_1_101
Type: CAZyme
Location: 115955 - 117751 (-)
Type: CAZyme
Location: 115955 - 117751 (-)
Gene ID: MGYG000004367_1_102
Type: pfam
Location: 118237 - 118668 (-)
Type: pfam
Location: 118237 - 118668 (-)
Gene ID: MGYG000004367_1_103
Type: CAZyme
Location: 118743 - 119912 (-)
Type: CAZyme
Location: 118743 - 119912 (-)
Gene ID: MGYG000004367_1_104
Type: TF
Location: 120056 - 120787 (-)
Type: TF
Location: 120056 - 120787 (-)
Gene ID: MGYG000004367_1_105
Type: TC
Location: 121020 - 122507 (-)
Type: TC
Location: 121020 - 122507 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902494565
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004367_1_98 | vegetarian > vegan | 2.52098 | 0.01560 |
| MGYG000004367_1_100 | vegetarian > vegan | 3.36870 | 0.01560 |
| MGYG000004367_1_101 | vegetarian > vegan | 2.74233 | 0.01560 |
| MGYG000004367_1_104 | vegetarian > vegan | 3.38548 | 0.01560 |