Cluster: MGYG000004335_CGC10
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004335
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004335_8 | MGYG000004335_8_37 | 44796 | 46013 | - | GT4 |
| pfam | MGYG000004335_8 | MGYG000004335_8_38 | 46028 | 46792 | - | BcrAD_BadFG |
| pfam | MGYG000004335_8 | MGYG000004335_8_39 | 46947 | 48110 | - | HGD-D |
| TC | MGYG000004335_8 | MGYG000004335_8_40 | 48187 | 48972 | - | 3.A.1.5.36 |
| TC | MGYG000004335_8 | MGYG000004335_8_41 | 48962 | 49957 | - | 3.A.1.5.37 |
| TC | MGYG000004335_8 | MGYG000004335_8_42 | 49961 | 50791 | - | 3.A.1.5.39 |
| TC | MGYG000004335_8 | MGYG000004335_8_43 | 50788 | 51741 | - | 3.A.1.5.39 |
| TC | MGYG000004335_8 | MGYG000004335_8_44 | 51830 | 53440 | - | 3.A.1.5.11 |
| pfam | MGYG000004335_8 | MGYG000004335_8_45 | 53625 | 54908 | - | HGD-D |
| TC | MGYG000004335_8 | MGYG000004335_8_46 | 55338 | 56408 | - | 3.A.1.1.3 |
| TC | MGYG000004335_8 | MGYG000004335_8_47 | 56412 | 57854 | - | 3.A.1.8.1 |
Gene ID: MGYG000004335_8_37
Type: CAZyme
Location: 44796 - 46013 (-)
Type: CAZyme
Location: 44796 - 46013 (-)
Gene ID: MGYG000004335_8_38
Type: pfam
Location: 46028 - 46792 (-)
Type: pfam
Location: 46028 - 46792 (-)
Gene ID: MGYG000004335_8_39
Type: pfam
Location: 46947 - 48110 (-)
Type: pfam
Location: 46947 - 48110 (-)
Gene ID: MGYG000004335_8_40
Type: TC
Location: 48187 - 48972 (-)
Type: TC
Location: 48187 - 48972 (-)
Gene ID: MGYG000004335_8_41
Type: TC
Location: 48962 - 49957 (-)
Type: TC
Location: 48962 - 49957 (-)
Gene ID: MGYG000004335_8_42
Type: TC
Location: 49961 - 50791 (-)
Type: TC
Location: 49961 - 50791 (-)
Gene ID: MGYG000004335_8_43
Type: TC
Location: 50788 - 51741 (-)
Type: TC
Location: 50788 - 51741 (-)
Gene ID: MGYG000004335_8_44
Type: TC
Location: 51830 - 53440 (-)
Type: TC
Location: 51830 - 53440 (-)
Gene ID: MGYG000004335_8_45
Type: pfam
Location: 53625 - 54908 (-)
Type: pfam
Location: 53625 - 54908 (-)
Gene ID: MGYG000004335_8_46
Type: TC
Location: 55338 - 56408 (-)
Type: TC
Location: 55338 - 56408 (-)
Gene ID: MGYG000004335_8_47
Type: TC
Location: 56412 - 57854 (-)
Type: TC
Location: 56412 - 57854 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902494195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004335_8_37 | vegan > omnivore | 1.62954 | 0.00566 |
| MGYG000004335_8_40 | vegan > omnivore | 2.87660 | 0.00566 |
| MGYG000004335_8_40 | vegetarian > omnivore | 1.00096 | 0.04425 |
| MGYG000004335_8_42 | vegan > omnivore | 3.00978 | 0.00566 |
| MGYG000004335_8_42 | vegetarian > omnivore | 1.20765 | 0.04425 |
| MGYG000004335_8_43 | vegan > omnivore | 2.83185 | 0.00566 |
| MGYG000004335_8_43 | vegetarian > omnivore | 1.19121 | 0.04425 |
| MGYG000004335_8_44 | vegan > omnivore | 3.35531 | 0.00566 |
| MGYG000004335_8_44 | vegetarian > omnivore | 1.05894 | 0.04425 |