Cluster: MGYG000004297_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004297
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004297_6 | MGYG000004297_6_7 | 7085 | 8254 | - | CE9 |
| STP | MGYG000004297_6 | MGYG000004297_6_8 | 8373 | 9539 | - | SIS | SIS |
| TF | MGYG000004297_6 | MGYG000004297_6_9 | 9651 | 10385 | - | GntR |
| TC | MGYG000004297_6 | MGYG000004297_6_10 | 10472 | 10900 | - | 4.A.6.1.8 |
| NULL(UNKNOWN) | MGYG000004297_6 | MGYG000004297_6_11 | 10982 | 11605 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004297_6 | MGYG000004297_6_12 | 11794 | 12633 | - | 4.A.6.1.18 |
| TC | MGYG000004297_6 | MGYG000004297_6_13 | 12623 | 13510 | - | 4.A.6.1.18 |
| TC | MGYG000004297_6 | MGYG000004297_6_14 | 13604 | 14068 | - | 4.A.6.1.18 |
| CAZyme | MGYG000004297_6 | MGYG000004297_6_15 | 14071 | 15867 | - | GH35 |
| TC | MGYG000004297_6 | MGYG000004297_6_16 | 16271 | 16993 | - | 4.A.6.1.5 |
| pfam | MGYG000004297_6 | MGYG000004297_6_17 | 17182 | 17655 | - | DUF386 |
| CAZyme | MGYG000004297_6 | MGYG000004297_6_18 | 17688 | 18857 | - | CE9 |
Gene ID: MGYG000004297_6_7
Type: CAZyme
Location: 7085 - 8254 (-)
Type: CAZyme
Location: 7085 - 8254 (-)
Gene ID: MGYG000004297_6_8
Type: STP
Location: 8373 - 9539 (-)
Type: STP
Location: 8373 - 9539 (-)
Gene ID: MGYG000004297_6_9
Type: TF
Location: 9651 - 10385 (-)
Type: TF
Location: 9651 - 10385 (-)
Gene ID: MGYG000004297_6_10
Type: TC
Location: 10472 - 10900 (-)
Type: TC
Location: 10472 - 10900 (-)
Gene ID: MGYG000004297_6_11
Type:
Location: 10982 - 11605 (-)
Type:
Location: 10982 - 11605 (-)
Gene ID: MGYG000004297_6_12
Type: TC
Location: 11794 - 12633 (-)
Type: TC
Location: 11794 - 12633 (-)
Gene ID: MGYG000004297_6_13
Type: TC
Location: 12623 - 13510 (-)
Type: TC
Location: 12623 - 13510 (-)
Gene ID: MGYG000004297_6_14
Type: TC
Location: 13604 - 14068 (-)
Type: TC
Location: 13604 - 14068 (-)
Gene ID: MGYG000004297_6_15
Type: CAZyme
Location: 14071 - 15867 (-)
Type: CAZyme
Location: 14071 - 15867 (-)
Gene ID: MGYG000004297_6_16
Type: TC
Location: 16271 - 16993 (-)
Type: TC
Location: 16271 - 16993 (-)
Gene ID: MGYG000004297_6_17
Type: pfam
Location: 17182 - 17655 (-)
Type: pfam
Location: 17182 - 17655 (-)
Gene ID: MGYG000004297_6_18
Type: CAZyme
Location: 17688 - 18857 (-)
Type: CAZyme
Location: 17688 - 18857 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902493895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004297_6_12 | vegetarian > vegan | 2.44506 | 0.01287 |
| MGYG000004297_6_13 | vegetarian > vegan | 2.55312 | 0.01287 |
| MGYG000004297_6_14 | vegetarian > vegan | 3.43654 | 0.01287 |
| MGYG000004297_6_15 | vegetarian > vegan | 2.82295 | 0.01287 |