Cluster: MGYG000004286_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004286
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004286_9 | MGYG000004286_9_3 | 1660 | 2148 | + | 4.A.6.1.9 |
| TC | MGYG000004286_9 | MGYG000004286_9_4 | 2221 | 3078 | + | 4.A.6.1.1 |
| TC | MGYG000004286_9 | MGYG000004286_9_5 | 3078 | 3905 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | MGYG000004286_9 | MGYG000004286_9_6 | 4101 | 4427 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000004286_9 | MGYG000004286_9_7 | 4532 | 4972 | + | MarR |
| CAZyme | MGYG000004286_9 | MGYG000004286_9_8 | 5487 | 11900 | + | GH31_18 |
Gene ID: MGYG000004286_9_3
Type: TC
Location: 1660 - 2148 (+)
Type: TC
Location: 1660 - 2148 (+)
Gene ID: MGYG000004286_9_4
Type: TC
Location: 2221 - 3078 (+)
Type: TC
Location: 2221 - 3078 (+)
Gene ID: MGYG000004286_9_5
Type: TC
Location: 3078 - 3905 (+)
Type: TC
Location: 3078 - 3905 (+)
Gene ID: MGYG000004286_9_6
Type:
Location: 4101 - 4427 (+)
Type:
Location: 4101 - 4427 (+)
Gene ID: MGYG000004286_9_7
Type: TF
Location: 4532 - 4972 (+)
Type: TF
Location: 4532 - 4972 (+)
Gene ID: MGYG000004286_9_8
Type: CAZyme
Location: 5487 - 11900 (+)
Type: CAZyme
Location: 5487 - 11900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902406375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004286_9_8 | vegetarian > omnivore | 1.45912 | 0.04699 |
| MGYG000004286_9_8 | vegetarian > vegan | 2.36812 | 0.00110 |