Cluster: MGYG000004281_CGC52
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: MGYG000004281
- CGC Family ID: CGCFAM_01404
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004281_34 | MGYG000004281_34_6 | 6458 | 8128 | - | 2.A.81.1.2 |
| pfam | MGYG000004281_34 | MGYG000004281_34_7 | 9446 | 10690 | + | Metallophos | SbcD_C |
| pfam | MGYG000004281_34 | MGYG000004281_34_8 | 10687 | 13767 | + | AAA_23 | AAA_29 | SbcC_Walker_B |
| TC | MGYG000004281_34 | MGYG000004281_34_9 | 13768 | 17094 | - | 9.A.25.1.1 |
| CAZyme | MGYG000004281_34 | MGYG000004281_34_10 | 17094 | 18257 | - | GH105 |
| TC | MGYG000004281_34 | MGYG000004281_34_11 | 18453 | 20066 | - | 8.A.46.1.6 |
| TC | MGYG000004281_34 | MGYG000004281_34_12 | 20089 | 23172 | - | 1.B.14.6.1 |
| TF | MGYG000004281_34 | MGYG000004281_34_13 | 23324 | 27391 | - | HTH_AraC |
| CAZyme | MGYG000004281_34 | MGYG000004281_34_14 | 27507 | 29624 | + | GH2 |
| pfam | MGYG000004281_34 | MGYG000004281_34_15 | 29740 | 30510 | - | BetaGal_ABD_1 | BetaGal_gal-bd |
| CAZyme | MGYG000004281_34 | MGYG000004281_34_16 | 30520 | 33246 | - | GH2 |
| TF | MGYG000004281_34 | MGYG000004281_34_17 | 33361 | 37383 | - | HTH_AraC | HTH_AraC |
| TC | MGYG000004281_34 | MGYG000004281_34_18 | 37380 | 39725 | - | 2.A.37.4.2 |
| CAZyme | MGYG000004281_34 | MGYG000004281_34_19 | 39836 | 41854 | + | GH13_8 |
| pfam | MGYG000004281_34 | MGYG000004281_34_20 | 41882 | 42856 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | MGYG000004281_34 | MGYG000004281_34_21 | 42934 | 45534 | - | GH3 |
Gene ID: MGYG000004281_34_6
Type: TC
Location: 6458 - 8128 (-)
Type: TC
Location: 6458 - 8128 (-)
Gene ID: MGYG000004281_34_7
Type: pfam
Location: 9446 - 10690 (+)
Type: pfam
Location: 9446 - 10690 (+)
Gene ID: MGYG000004281_34_8
Type: pfam
Location: 10687 - 13767 (+)
Type: pfam
Location: 10687 - 13767 (+)
Gene ID: MGYG000004281_34_9
Type: TC
Location: 13768 - 17094 (-)
Type: TC
Location: 13768 - 17094 (-)
Gene ID: MGYG000004281_34_10
Type: CAZyme
Location: 17094 - 18257 (-)
Type: CAZyme
Location: 17094 - 18257 (-)
Gene ID: MGYG000004281_34_11
Type: TC
Location: 18453 - 20066 (-)
Type: TC
Location: 18453 - 20066 (-)
Gene ID: MGYG000004281_34_12
Type: TC
Location: 20089 - 23172 (-)
Type: TC
Location: 20089 - 23172 (-)
Gene ID: MGYG000004281_34_13
Type: TF
Location: 23324 - 27391 (-)
Type: TF
Location: 23324 - 27391 (-)
Gene ID: MGYG000004281_34_14
Type: CAZyme
Location: 27507 - 29624 (+)
Type: CAZyme
Location: 27507 - 29624 (+)
Gene ID: MGYG000004281_34_15
Type: pfam
Location: 29740 - 30510 (-)
Type: pfam
Location: 29740 - 30510 (-)
Gene ID: MGYG000004281_34_16
Type: CAZyme
Location: 30520 - 33246 (-)
Type: CAZyme
Location: 30520 - 33246 (-)
Gene ID: MGYG000004281_34_17
Type: TF
Location: 33361 - 37383 (-)
Type: TF
Location: 33361 - 37383 (-)
Gene ID: MGYG000004281_34_18
Type: TC
Location: 37380 - 39725 (-)
Type: TC
Location: 37380 - 39725 (-)
Gene ID: MGYG000004281_34_19
Type: CAZyme
Location: 39836 - 41854 (+)
Type: CAZyme
Location: 39836 - 41854 (+)
Gene ID: MGYG000004281_34_20
Type: pfam
Location: 41882 - 42856 (+)
Type: pfam
Location: 41882 - 42856 (+)
Gene ID: MGYG000004281_34_21
Type: CAZyme
Location: 42934 - 45534 (-)
Type: CAZyme
Location: 42934 - 45534 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp900552465
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004281_34_11 | vegetarian > vegan | 1.14348 | 0.01548 |
| MGYG000004281_34_19 | vegetarian > omnivore | 1.76132 | 0.00050 |