Cluster: MGYG000004271_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004271
- CGC Family ID: CGCFAM_02385
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004271_36 | MGYG000004271_36_3 | 5588 | 6436 | + | CE4 |
| TC | MGYG000004271_36 | MGYG000004271_36_4 | 6549 | 8588 | + | 1.B.52.2.2 |
| TF | MGYG000004271_36 | MGYG000004271_36_5 | 8767 | 9471 | + | LytTR |
| pfam | MGYG000004271_36 | MGYG000004271_36_6 | 9474 | 10739 | + | HATPase_c_5 |
| CAZyme | MGYG000004271_36 | MGYG000004271_36_7 | 10990 | 12912 | + | GH2 |
| TC | MGYG000004271_36 | MGYG000004271_36_8 | 12935 | 14497 | + | 2.A.2.3.6 |
Gene ID: MGYG000004271_36_3
Type: CAZyme
Location: 5588 - 6436 (+)
Type: CAZyme
Location: 5588 - 6436 (+)
Gene ID: MGYG000004271_36_4
Type: TC
Location: 6549 - 8588 (+)
Type: TC
Location: 6549 - 8588 (+)
Gene ID: MGYG000004271_36_5
Type: TF
Location: 8767 - 9471 (+)
Type: TF
Location: 8767 - 9471 (+)
Gene ID: MGYG000004271_36_6
Type: pfam
Location: 9474 - 10739 (+)
Type: pfam
Location: 9474 - 10739 (+)
Gene ID: MGYG000004271_36_7
Type: CAZyme
Location: 10990 - 12912 (+)
Type: CAZyme
Location: 10990 - 12912 (+)
Gene ID: MGYG000004271_36_8
Type: TC
Location: 12935 - 14497 (+)
Type: TC
Location: 12935 - 14497 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900542495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004271_36_7 | vegetarian > vegan | 1.05710 | 0.00079 |