Cluster: MGYG000004271_CGC21
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004271
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004271_8 | MGYG000004271_8_116 | 119381 | 121162 | - | 3.A.1.111.2 |
| TC | MGYG000004271_8 | MGYG000004271_8_117 | 121181 | 122974 | - | 3.A.1.111.2 |
| CAZyme | MGYG000004271_8 | MGYG000004271_8_118 | 123173 | 124492 | - | GH30_1 |
| TC | MGYG000004271_8 | MGYG000004271_8_119 | 124551 | 126200 | - | 3.A.1.1.29 |
| TC | MGYG000004271_8 | MGYG000004271_8_120 | 126221 | 127096 | - | 3.A.1.1.29 |
| TC | MGYG000004271_8 | MGYG000004271_8_121 | 127107 | 128060 | - | 3.A.1.1.29 |
| TF | MGYG000004271_8 | MGYG000004271_8_122 | 128256 | 129119 | + | HTH_AraC |
| pfam | MGYG000004271_8 | MGYG000004271_8_123 | 129116 | 130054 | - | ROK |
| CAZyme | MGYG000004271_8 | MGYG000004271_8_124 | 130191 | 132407 | - | GT51 |
| NULL(UNKNOWN) | MGYG000004271_8 | MGYG000004271_8_125 | 132529 | 133515 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | MGYG000004271_8 | MGYG000004271_8_126 | 133922 | 135565 | - | 1.C.105.2.8 |
Gene ID: MGYG000004271_8_116
Type: TC
Location: 119381 - 121162 (-)
Type: TC
Location: 119381 - 121162 (-)
Gene ID: MGYG000004271_8_117
Type: TC
Location: 121181 - 122974 (-)
Type: TC
Location: 121181 - 122974 (-)
Gene ID: MGYG000004271_8_118
Type: CAZyme
Location: 123173 - 124492 (-)
Type: CAZyme
Location: 123173 - 124492 (-)
Gene ID: MGYG000004271_8_119
Type: TC
Location: 124551 - 126200 (-)
Type: TC
Location: 124551 - 126200 (-)
Gene ID: MGYG000004271_8_120
Type: TC
Location: 126221 - 127096 (-)
Type: TC
Location: 126221 - 127096 (-)
Gene ID: MGYG000004271_8_121
Type: TC
Location: 127107 - 128060 (-)
Type: TC
Location: 127107 - 128060 (-)
Gene ID: MGYG000004271_8_122
Type: TF
Location: 128256 - 129119 (+)
Type: TF
Location: 128256 - 129119 (+)
Gene ID: MGYG000004271_8_123
Type: pfam
Location: 129116 - 130054 (-)
Type: pfam
Location: 129116 - 130054 (-)
Gene ID: MGYG000004271_8_124
Type: CAZyme
Location: 130191 - 132407 (-)
Type: CAZyme
Location: 130191 - 132407 (-)
Gene ID: MGYG000004271_8_125
Type:
Location: 132529 - 133515 (-)
Type:
Location: 132529 - 133515 (-)
Gene ID: MGYG000004271_8_126
Type: TC
Location: 133922 - 135565 (-)
Type: TC
Location: 133922 - 135565 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900542495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004271_8_120 | vegetarian > vegan | 1.09451 | 0.00079 |
| MGYG000004271_8_122 | vegetarian > vegan | 1.09959 | 0.00079 |
| MGYG000004271_8_125 | vegetarian > vegan | 1.72855 | 0.00079 |