Cluster: MGYG000004271_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004271
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004271_4 | MGYG000004271_4_87 | 99441 | 100892 | + | 9.B.18.1.2 |
| CAZyme | MGYG000004271_4 | MGYG000004271_4_88 | 100896 | 102050 | + | GT4 |
| pfam | MGYG000004271_4 | MGYG000004271_4_89 | 102076 | 102717 | + | Hexapep |
| CAZyme | MGYG000004271_4 | MGYG000004271_4_90 | 102690 | 103676 | + | GT2 |
| TC | MGYG000004271_4 | MGYG000004271_4_91 | 103701 | 105149 | + | 2.A.66.2.16 |
Gene ID: MGYG000004271_4_87
Type: TC
Location: 99441 - 100892 (+)
Type: TC
Location: 99441 - 100892 (+)
Gene ID: MGYG000004271_4_88
Type: CAZyme
Location: 100896 - 102050 (+)
Type: CAZyme
Location: 100896 - 102050 (+)
Gene ID: MGYG000004271_4_89
Type: pfam
Location: 102076 - 102717 (+)
Type: pfam
Location: 102076 - 102717 (+)
Gene ID: MGYG000004271_4_90
Type: CAZyme
Location: 102690 - 103676 (+)
Type: CAZyme
Location: 102690 - 103676 (+)
Gene ID: MGYG000004271_4_91
Type: TC
Location: 103701 - 105149 (+)
Type: TC
Location: 103701 - 105149 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Roseburia
Species
Roseburia sp900542495
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004271_4_88 | vegetarian > omnivore | 1.83740 | 0.01294 |
| MGYG000004271_4_90 | vegetarian > omnivore | 1.89265 | 0.01294 |
| MGYG000004271_4_90 | vegetarian > vegan | 1.30364 | 0.00079 |