Cluster: MGYG000004258_CGC20
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: MGYG000004258
- CGC Family ID: CGCFAM_00007
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004258_22 | MGYG000004258_22_12 | 11327 | 12841 | - | 2.A.66.2.23 |
| pfam | MGYG000004258_22 | MGYG000004258_22_13 | 12834 | 13907 | - | Wzy_C |
| CAZyme | MGYG000004258_22 | MGYG000004258_22_14 | 14059 | 15132 | - | GT4 |
| CAZyme | MGYG000004258_22 | MGYG000004258_22_15 | 15129 | 16193 | - | GT4 |
| pfam | MGYG000004258_22 | MGYG000004258_22_16 | 16370 | 17683 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | MGYG000004258_22 | MGYG000004258_22_17 | 17685 | 18485 | - | GT2 |
| TC | MGYG000004258_22 | MGYG000004258_22_18 | 18482 | 19219 | - | 9.B.18.1.2 |
Gene ID: MGYG000004258_22_12
Type: TC
Location: 11327 - 12841 (-)
Type: TC
Location: 11327 - 12841 (-)
Gene ID: MGYG000004258_22_13
Type: pfam
Location: 12834 - 13907 (-)
Type: pfam
Location: 12834 - 13907 (-)
Gene ID: MGYG000004258_22_14
Type: CAZyme
Location: 14059 - 15132 (-)
Type: CAZyme
Location: 14059 - 15132 (-)
Gene ID: MGYG000004258_22_15
Type: CAZyme
Location: 15129 - 16193 (-)
Type: CAZyme
Location: 15129 - 16193 (-)
Gene ID: MGYG000004258_22_16
Type: pfam
Location: 16370 - 17683 (-)
Type: pfam
Location: 16370 - 17683 (-)
Gene ID: MGYG000004258_22_17
Type: CAZyme
Location: 17685 - 18485 (-)
Type: CAZyme
Location: 17685 - 18485 (-)
Gene ID: MGYG000004258_22_18
Type: TC
Location: 18482 - 19219 (-)
Type: TC
Location: 18482 - 19219 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902405995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.