Cluster: MGYG000004258_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004258
- CGC Family ID: CGCFAM_00182
- Continent: Asia
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004258_10 | MGYG000004258_10_27 | 34099 | 35316 | - | GT4 |
| pfam | MGYG000004258_10 | MGYG000004258_10_28 | 35331 | 36095 | - | BcrAD_BadFG |
| pfam | MGYG000004258_10 | MGYG000004258_10_29 | 36146 | 37309 | - | HGD-D |
| TC | MGYG000004258_10 | MGYG000004258_10_30 | 37386 | 38171 | - | 3.A.1.5.36 |
| TC | MGYG000004258_10 | MGYG000004258_10_31 | 38161 | 39156 | - | 3.A.1.5.37 |
| TC | MGYG000004258_10 | MGYG000004258_10_32 | 39160 | 39990 | - | 3.A.1.5.39 |
| TC | MGYG000004258_10 | MGYG000004258_10_33 | 39987 | 40940 | - | 3.A.1.5.11 |
| TC | MGYG000004258_10 | MGYG000004258_10_34 | 41029 | 42639 | - | 3.A.1.5.11 |
| pfam | MGYG000004258_10 | MGYG000004258_10_35 | 42824 | 44107 | - | HGD-D |
| TC | MGYG000004258_10 | MGYG000004258_10_36 | 44537 | 45607 | - | 3.A.1.10.2 |
| TC | MGYG000004258_10 | MGYG000004258_10_37 | 45611 | 47053 | - | 3.A.1.8.1 |
Gene ID: MGYG000004258_10_27
Type: CAZyme
Location: 34099 - 35316 (-)
Type: CAZyme
Location: 34099 - 35316 (-)
Gene ID: MGYG000004258_10_28
Type: pfam
Location: 35331 - 36095 (-)
Type: pfam
Location: 35331 - 36095 (-)
Gene ID: MGYG000004258_10_29
Type: pfam
Location: 36146 - 37309 (-)
Type: pfam
Location: 36146 - 37309 (-)
Gene ID: MGYG000004258_10_30
Type: TC
Location: 37386 - 38171 (-)
Type: TC
Location: 37386 - 38171 (-)
Gene ID: MGYG000004258_10_31
Type: TC
Location: 38161 - 39156 (-)
Type: TC
Location: 38161 - 39156 (-)
Gene ID: MGYG000004258_10_32
Type: TC
Location: 39160 - 39990 (-)
Type: TC
Location: 39160 - 39990 (-)
Gene ID: MGYG000004258_10_33
Type: TC
Location: 39987 - 40940 (-)
Type: TC
Location: 39987 - 40940 (-)
Gene ID: MGYG000004258_10_34
Type: TC
Location: 41029 - 42639 (-)
Type: TC
Location: 41029 - 42639 (-)
Gene ID: MGYG000004258_10_35
Type: pfam
Location: 42824 - 44107 (-)
Type: pfam
Location: 42824 - 44107 (-)
Gene ID: MGYG000004258_10_36
Type: TC
Location: 44537 - 45607 (-)
Type: TC
Location: 44537 - 45607 (-)
Gene ID: MGYG000004258_10_37
Type: TC
Location: 45611 - 47053 (-)
Type: TC
Location: 45611 - 47053 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902405995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004258_10_27 | vegan > omnivore | 1.68740 | 0.00863 |
| MGYG000004258_10_30 | vegan > omnivore | 2.93004 | 0.00863 |
| MGYG000004258_10_31 | vegan > omnivore | 1.14105 | 0.00863 |
| MGYG000004258_10_32 | vegan > omnivore | 3.02565 | 0.00863 |
| MGYG000004258_10_32 | vegetarian > omnivore | 1.28233 | 0.02242 |
| MGYG000004258_10_33 | vegan > omnivore | 2.75764 | 0.00863 |
| MGYG000004258_10_33 | vegetarian > omnivore | 1.18380 | 0.02242 |
| MGYG000004258_10_34 | vegan > omnivore | 3.26467 | 0.00863 |
| MGYG000004258_10_34 | vegetarian > omnivore | 1.03934 | 0.02242 |