Cluster: MGYG000004209_CGC5
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004209
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004209_2 | MGYG000004209_2_14 | 14290 | 15771 | + | 3.A.1.8.1 |
| TC | MGYG000004209_2 | MGYG000004209_2_15 | 15775 | 16845 | + | 3.A.1.1.3 |
| pfam | MGYG000004209_2 | MGYG000004209_2_16 | 17276 | 18559 | + | HGD-D |
| TC | MGYG000004209_2 | MGYG000004209_2_17 | 18744 | 20354 | + | 3.A.1.5.11 |
| TC | MGYG000004209_2 | MGYG000004209_2_18 | 20443 | 21396 | + | 3.A.1.5.39 |
| TC | MGYG000004209_2 | MGYG000004209_2_19 | 21393 | 22223 | + | 3.A.1.5.39 |
| TC | MGYG000004209_2 | MGYG000004209_2_20 | 22227 | 23222 | + | 3.A.1.5.37 |
| TC | MGYG000004209_2 | MGYG000004209_2_21 | 23212 | 23997 | + | 3.A.1.5.36 |
| pfam | MGYG000004209_2 | MGYG000004209_2_22 | 24074 | 25237 | + | HGD-D |
| pfam | MGYG000004209_2 | MGYG000004209_2_23 | 25342 | 26106 | + | BcrAD_BadFG |
| CAZyme | MGYG000004209_2 | MGYG000004209_2_24 | 26119 | 27351 | + | GT4 |
Gene ID: MGYG000004209_2_14
Type: TC
Location: 14290 - 15771 (+)
Type: TC
Location: 14290 - 15771 (+)
Gene ID: MGYG000004209_2_15
Type: TC
Location: 15775 - 16845 (+)
Type: TC
Location: 15775 - 16845 (+)
Gene ID: MGYG000004209_2_16
Type: pfam
Location: 17276 - 18559 (+)
Type: pfam
Location: 17276 - 18559 (+)
Gene ID: MGYG000004209_2_17
Type: TC
Location: 18744 - 20354 (+)
Type: TC
Location: 18744 - 20354 (+)
Gene ID: MGYG000004209_2_18
Type: TC
Location: 20443 - 21396 (+)
Type: TC
Location: 20443 - 21396 (+)
Gene ID: MGYG000004209_2_19
Type: TC
Location: 21393 - 22223 (+)
Type: TC
Location: 21393 - 22223 (+)
Gene ID: MGYG000004209_2_20
Type: TC
Location: 22227 - 23222 (+)
Type: TC
Location: 22227 - 23222 (+)
Gene ID: MGYG000004209_2_21
Type: TC
Location: 23212 - 23997 (+)
Type: TC
Location: 23212 - 23997 (+)
Gene ID: MGYG000004209_2_22
Type: pfam
Location: 24074 - 25237 (+)
Type: pfam
Location: 24074 - 25237 (+)
Gene ID: MGYG000004209_2_23
Type: pfam
Location: 25342 - 26106 (+)
Type: pfam
Location: 25342 - 26106 (+)
Gene ID: MGYG000004209_2_24
Type: CAZyme
Location: 26119 - 27351 (+)
Type: CAZyme
Location: 26119 - 27351 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902493375
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004209_2_17 | vegan > omnivore | 3.33017 | 0.00701 |
| MGYG000004209_2_17 | vegetarian > omnivore | 1.08891 | 0.03201 |
| MGYG000004209_2_18 | vegan > omnivore | 2.79569 | 0.00701 |
| MGYG000004209_2_18 | vegetarian > omnivore | 1.21798 | 0.03201 |
| MGYG000004209_2_19 | vegan > omnivore | 2.99725 | 0.00701 |
| MGYG000004209_2_19 | vegetarian > omnivore | 1.23657 | 0.03201 |
| MGYG000004209_2_21 | vegan > omnivore | 2.85321 | 0.00701 |
| MGYG000004209_2_21 | vegetarian > omnivore | 1.00982 | 0.03201 |