Cluster: MGYG000004181_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004181
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004181_5 | MGYG000004181_5_9 | 10903 | 11391 | + | 4.A.6.1.9 |
| TC | MGYG000004181_5 | MGYG000004181_5_10 | 11464 | 12321 | + | 4.A.6.1.1 |
| TC | MGYG000004181_5 | MGYG000004181_5_11 | 12321 | 13148 | + | 4.A.6.1.6 |
| NULL(UNKNOWN) | MGYG000004181_5 | MGYG000004181_5_12 | 13344 | 13670 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | MGYG000004181_5 | MGYG000004181_5_13 | 13775 | 14215 | + | MarR |
| CAZyme | MGYG000004181_5 | MGYG000004181_5_14 | 14727 | 21140 | + | GH31_18 |
Gene ID: MGYG000004181_5_9
Type: TC
Location: 10903 - 11391 (+)
Type: TC
Location: 10903 - 11391 (+)
Gene ID: MGYG000004181_5_10
Type: TC
Location: 11464 - 12321 (+)
Type: TC
Location: 11464 - 12321 (+)
Gene ID: MGYG000004181_5_11
Type: TC
Location: 12321 - 13148 (+)
Type: TC
Location: 12321 - 13148 (+)
Gene ID: MGYG000004181_5_12
Type:
Location: 13344 - 13670 (+)
Type:
Location: 13344 - 13670 (+)
Gene ID: MGYG000004181_5_13
Type: TF
Location: 13775 - 14215 (+)
Type: TF
Location: 13775 - 14215 (+)
Gene ID: MGYG000004181_5_14
Type: CAZyme
Location: 14727 - 21140 (+)
Type: CAZyme
Location: 14727 - 21140 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902493145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004181_5_14 | vegetarian > omnivore | 1.37917 | 0.03811 |
| MGYG000004181_5_14 | vegetarian > vegan | 2.06466 | 0.00313 |