Cluster: MGYG000004181_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: MGYG000004181
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | MGYG000004181_1 | MGYG000004181_1_48 | 49268 | 49741 | + | 4.A.6.1.18 |
| TC | MGYG000004181_1 | MGYG000004181_1_49 | 49751 | 50536 | + | 4.A.6.1.13 |
| TC | MGYG000004181_1 | MGYG000004181_1_50 | 50539 | 51372 | + | 4.A.6.1.13 |
| pfam | MGYG000004181_1 | MGYG000004181_1_51 | 51399 | 51797 | + | EIIA-man |
| CAZyme | MGYG000004181_1 | MGYG000004181_1_52 | 51810 | 52934 | + | GH172 |
Gene ID: MGYG000004181_1_48
Type: TC
Location: 49268 - 49741 (+)
Type: TC
Location: 49268 - 49741 (+)
Gene ID: MGYG000004181_1_49
Type: TC
Location: 49751 - 50536 (+)
Type: TC
Location: 49751 - 50536 (+)
Gene ID: MGYG000004181_1_50
Type: TC
Location: 50539 - 51372 (+)
Type: TC
Location: 50539 - 51372 (+)
Gene ID: MGYG000004181_1_51
Type: pfam
Location: 51399 - 51797 (+)
Type: pfam
Location: 51399 - 51797 (+)
Gene ID: MGYG000004181_1_52
Type: CAZyme
Location: 51810 - 52934 (+)
Type: CAZyme
Location: 51810 - 52934 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902493145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004181_1_48 | vegan > omnivore | 1.08717 | 0.00701 |
| MGYG000004181_1_52 | vegan > omnivore | 1.01997 | 0.00701 |