Cluster: MGYG000004180_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: MGYG000004180
- CGC Family ID: CGCFAM_00111
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004180_40 | MGYG000004180_40_23 | 23507 | 25936 | - | GH92 |
| TF | MGYG000004180_40 | MGYG000004180_40_24 | 26179 | 26748 | + | GerE |
| STP | MGYG000004180_40 | MGYG000004180_40_25 | 26973 | 27914 | + | FecR |
| TC | MGYG000004180_40 | MGYG000004180_40_26 | 28077 | 31436 | + | 1.B.14.6.1 |
| TC | MGYG000004180_40 | MGYG000004180_40_27 | 31454 | 32935 | + | 8.A.46.3.2 |
Gene ID: MGYG000004180_40_23
Type: CAZyme
Location: 23507 - 25936 (-)
Type: CAZyme
Location: 23507 - 25936 (-)
Gene ID: MGYG000004180_40_24
Type: TF
Location: 26179 - 26748 (+)
Type: TF
Location: 26179 - 26748 (+)
Gene ID: MGYG000004180_40_25
Type: STP
Location: 26973 - 27914 (+)
Type: STP
Location: 26973 - 27914 (+)
Gene ID: MGYG000004180_40_26
Type: TC
Location: 28077 - 31436 (+)
Type: TC
Location: 28077 - 31436 (+)
Gene ID: MGYG000004180_40_27
Type: TC
Location: 31454 - 32935 (+)
Type: TC
Location: 31454 - 32935 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides sp902493135
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004180_40_24 | vegetarian > vegan | 1.34842 | 0.00226 |
| MGYG000004180_40_25 | vegetarian > vegan | 1.44700 | 0.00226 |
| MGYG000004180_40_26 | vegetarian > omnivore | 1.56810 | 0.00180 |
| MGYG000004180_40_27 | vegetarian > omnivore | 1.78638 | 0.00180 |
| MGYG000004180_40_27 | vegetarian > vegan | 1.23475 | 0.00226 |