Cluster: MGYG000004172_CGC3
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: alginate
- Genome ID: MGYG000004172
- CGC Family ID: CGCFAM_00331
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004172_1 | MGYG000004172_1_55 | 66463 | 67881 | + | CE20 |
| CAZyme | MGYG000004172_1 | MGYG000004172_1_56 | 68016 | 69170 | - | PL38 |
| pfam | MGYG000004172_1 | MGYG000004172_1_57 | 69270 | 70022 | - | adh_short | KR | adh_short_C2 | SDR |
| TC | MGYG000004172_1 | MGYG000004172_1_58 | 70052 | 71503 | - | 2.A.1.14.25 |
| pfam | MGYG000004172_1 | MGYG000004172_1_59 | 71523 | 71867 | - | Cupin_2 |
| CAZyme | MGYG000004172_1 | MGYG000004172_1_60 | 71892 | 74099 | - | PL17_2 | PL17_2 |
| CAZyme | MGYG000004172_1 | MGYG000004172_1_61 | 74109 | 76367 | - | PL6 | PL6_1 |
| CAZyme | MGYG000004172_1 | MGYG000004172_1_62 | 76380 | 77753 | - | PL6 |
| pfam | MGYG000004172_1 | MGYG000004172_1_63 | 77857 | 79776 | - | TIG |
| pfam | MGYG000004172_1 | MGYG000004172_1_64 | 79795 | 81525 | - | TIG |
| TC | MGYG000004172_1 | MGYG000004172_1_65 | 81546 | 83066 | - | 8.A.46.1.5 |
| TC | MGYG000004172_1 | MGYG000004172_1_66 | 83075 | 86236 | - | 1.B.14.6.1 |
| CAZyme | MGYG000004172_1 | MGYG000004172_1_67 | 86673 | 88490 | - | GH2 |
Gene ID: MGYG000004172_1_55
Type: CAZyme
Location: 66463 - 67881 (+)
Type: CAZyme
Location: 66463 - 67881 (+)
Gene ID: MGYG000004172_1_56
Type: CAZyme
Location: 68016 - 69170 (-)
Type: CAZyme
Location: 68016 - 69170 (-)
Gene ID: MGYG000004172_1_57
Type: pfam
Location: 69270 - 70022 (-)
Type: pfam
Location: 69270 - 70022 (-)
Gene ID: MGYG000004172_1_58
Type: TC
Location: 70052 - 71503 (-)
Type: TC
Location: 70052 - 71503 (-)
Gene ID: MGYG000004172_1_59
Type: pfam
Location: 71523 - 71867 (-)
Type: pfam
Location: 71523 - 71867 (-)
Gene ID: MGYG000004172_1_60
Type: CAZyme
Location: 71892 - 74099 (-)
Type: CAZyme
Location: 71892 - 74099 (-)
Gene ID: MGYG000004172_1_61
Type: CAZyme
Location: 74109 - 76367 (-)
Type: CAZyme
Location: 74109 - 76367 (-)
Gene ID: MGYG000004172_1_62
Type: CAZyme
Location: 76380 - 77753 (-)
Type: CAZyme
Location: 76380 - 77753 (-)
Gene ID: MGYG000004172_1_63
Type: pfam
Location: 77857 - 79776 (-)
Type: pfam
Location: 77857 - 79776 (-)
Gene ID: MGYG000004172_1_64
Type: pfam
Location: 79795 - 81525 (-)
Type: pfam
Location: 79795 - 81525 (-)
Gene ID: MGYG000004172_1_65
Type: TC
Location: 81546 - 83066 (-)
Type: TC
Location: 81546 - 83066 (-)
Gene ID: MGYG000004172_1_66
Type: TC
Location: 83075 - 86236 (-)
Type: TC
Location: 83075 - 86236 (-)
Gene ID: MGYG000004172_1_67
Type: CAZyme
Location: 86673 - 88490 (-)
Type: CAZyme
Location: 86673 - 88490 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Gallalistipes
Species
Gallalistipes aquisgranensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.