Cluster: MGYG000004156_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: MGYG000004156
- CGC Family ID: CGCFAM_01141
- Continent: Europe
- Source Study: Almeida et al., 2021 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | MGYG000004156_2 | MGYG000004156_2_53 | 56777 | 58153 | - | GH13_20 |
| TC | MGYG000004156_2 | MGYG000004156_2_54 | 58307 | 59503 | - | 2.A.1.2.18 |
| NULL(UNKNOWN) | MGYG000004156_2 | MGYG000004156_2_55 | 59679 | 60431 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | MGYG000004156_2 | MGYG000004156_2_56 | 60597 | 61970 | - | GH4 |
| STP | MGYG000004156_2 | MGYG000004156_2_57 | 62276 | 62899 | + | HTH_6 | SIS |
| TC | MGYG000004156_2 | MGYG000004156_2_58 | 62962 | 64626 | - | 4.A.1.1.3 |
| TC | MGYG000004156_2 | MGYG000004156_2_59 | 64941 | 67301 | - | 9.A.8.1.6 |
| TC | MGYG000004156_2 | MGYG000004156_2_60 | 67942 | 69405 | - | 2.A.3.2.3 |
Gene ID: MGYG000004156_2_53
Type: CAZyme
Location: 56777 - 58153 (-)
Type: CAZyme
Location: 56777 - 58153 (-)
Gene ID: MGYG000004156_2_54
Type: TC
Location: 58307 - 59503 (-)
Type: TC
Location: 58307 - 59503 (-)
Gene ID: MGYG000004156_2_55
Type:
Location: 59679 - 60431 (-)
Type:
Location: 59679 - 60431 (-)
Gene ID: MGYG000004156_2_56
Type: CAZyme
Location: 60597 - 61970 (-)
Type: CAZyme
Location: 60597 - 61970 (-)
Gene ID: MGYG000004156_2_57
Type: STP
Location: 62276 - 62899 (+)
Type: STP
Location: 62276 - 62899 (+)
Gene ID: MGYG000004156_2_58
Type: TC
Location: 62962 - 64626 (-)
Type: TC
Location: 62962 - 64626 (-)
Gene ID: MGYG000004156_2_59
Type: TC
Location: 64941 - 67301 (-)
Type: TC
Location: 64941 - 67301 (-)
Gene ID: MGYG000004156_2_60
Type: TC
Location: 67942 - 69405 (-)
Type: TC
Location: 67942 - 69405 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp902492755
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| MGYG000004156_2_55 | vegan > omnivore | 1.71147 | 0.00701 |
| MGYG000004156_2_56 | vegan > omnivore | 1.42458 | 0.00701 |
| MGYG000004156_2_57 | vegan > omnivore | 1.84351 | 0.00701 |
| MGYG000004156_2_60 | vegan > omnivore | 1.46071 | 0.00701 |